Aliases for SNORD35A Gene

Subcategory (RNA class) for SNORD35A Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORD35A Gene

  • Small Nucleolar RNA, C/D Box 35A 2 3 5
  • SNORD35A 2 5 170
  • RNA, U35 Small Nucleolar 2 3
  • RNU35A 2 3
  • U35 2 3
  • U35 Small Nucleolar RNA 3
  • U35 SnoRNA 3
  • SNODB84 177
  • RF00211 168
  • RNU35 3

External Ids for SNORD35A Gene

Previous HGNC Symbols for SNORD35A Gene

  • RNU35

Previous GeneCards Identifiers for SNORD35A Gene

  • GC19P054726
  • GC19P054733
  • GC19P054740
  • GC19P054747
  • GC19P054753
  • GC19P054760
  • GC19P054771
  • GC19P054784
  • GC19P049996
  • GC19P046371
  • GC19P049997
  • GC19P050012
  • GC19P050026
  • GC19P050045
  • GC19P049494
  • GC19P049501
  • GC19P049568
  • GC19P049575
  • GC19P049581
  • GC19P049606
  • GC19P049508
  • GC19P049517
  • GC19P049523
  • GC19P049529
  • GC19P049538
  • GC19P049549
  • GC19P049554
  • GC19P049559

Summaries for SNORD35A Gene

GeneCards Summary for SNORD35A Gene

SNORD35A (Small Nucleolar RNA, C/D Box 35A) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD35A include Acute Orbital Inflammation and Orbital Cellulitis.

Rfam classification for SNORD35A Gene

  • Small nucleolar RNA SNORD35

Additional gene information for SNORD35A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD35A Gene

Genomics for SNORD35A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD35A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD35A on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD35A gene promoter:
  • AP-4
  • c-Ets-1
  • E47
  • GATA-1
  • NF-1
  • NF-1/L
  • STAT3
  • Tal-1beta
  • TBP

Genomic Locations for SNORD35A Gene

Genomic Locations for SNORD35A Gene
chr19:49,491,175-49,491,260
(GRCh38/hg38)
Size:
86 bases
Orientation:
Plus strand
chr19:49,994,432-49,994,517
(GRCh37/hg19)
Size:
86 bases
Orientation:
Plus strand

Genomic View for SNORD35A Gene

Genes around SNORD35A on UCSC Golden Path with GeneCards custom track
SNORD35A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD35A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD35A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD35A Gene

Proteins for SNORD35A Gene

Post-translational modifications for SNORD35A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD35A Gene

Domains & Families for SNORD35A Gene

Gene Families for SNORD35A Gene

genes like me logo Genes that share domains with SNORD35A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD35A Gene

Function for SNORD35A Gene

Phenotypes From GWAS Catalog for SNORD35A Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD35A Gene

Localization for SNORD35A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD35A gene
Compartment Confidence
extracellular 1
cytoskeleton 1
mitochondrion 1
nucleus 1
endoplasmic reticulum 1
cytosol 1

Gene Ontology (GO) - Cellular Components for SNORD35A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD35A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD35A Gene

Pathways & Interactions for SNORD35A Gene

PathCards logo

SuperPathways for SNORD35A Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD35A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD35A: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD35A Gene

Drugs & Compounds for SNORD35A Gene

No Compound Related Data Available

Transcripts for SNORD35A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD35A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000026935A_9606 snoRNA 86 7

HGNC: 10162,

RefSeq: NR_000018,

Ensembl: ENST00000363389 (view in UCSC) ,

Rfam: RF00211,

snoDB: SNODB84,

snOPY: Homo_sapiens300566,

ENA: AB028893.1:4355..4440:ncRNA,

SNORD35A in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD35A Gene

No ASD Table

Relevant External Links for SNORD35A Gene

GeneLoc Exon Structure for
SNORD35A

No data available for mRNA/cDNA for SNORD35A Gene

Expression for SNORD35A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD35A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD35A

genes like me logo Genes that share expression patterns with SNORD35A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD35A Gene

Orthologs for SNORD35A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD35A Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD35 31
  • 99 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snord35a 31
  • 80 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORD35 31 31 31
  • 78 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORD35 31
  • 77 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORD35 31 31 31
  • 72 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia SNORD35 31 31
  • 69 (a)
OneToMany
Chicken
(Gallus gallus)
Aves SNORD35 31
  • 57 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SNORD35 31 31
  • 55 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORD35 31
  • 62 (a)
OneToOne
Species where no ortholog for SNORD35A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD35A Gene

ENSEMBL:
Gene Tree for SNORD35A (if available)
TreeFam:
Gene Tree for SNORD35A (if available)

Paralogs for SNORD35A Gene

No data available for Paralogs for SNORD35A Gene

Variants for SNORD35A Gene

Additional dbSNP identifiers (rs#s) for SNORD35A Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD35A Gene

Variant ID Type Subtype PubMed ID
nsv1160655 CNV deletion 26073780
nsv833862 CNV loss 17160897
nsv833863 CNV loss 17160897
nsv953599 CNV deletion 24416366
nsv960858 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495

Additional Variant Information for SNORD35A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD35A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD35A Gene

Disorders for SNORD35A Gene

MalaCards: The human disease database

(4) MalaCards diseases for SNORD35A Gene - From: DISEASES

Disorder Aliases PubMed IDs
acute orbital inflammation
  • acute inflammation of orbit
orbital cellulitis
klebsiella pneumonia
  • pneumonia due to klebsiella pneumoniae
mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes
  • melas
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD35A

genes like me logo Genes that share disorders with SNORD35A: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD35A Gene

Publications for SNORD35A Gene

  1. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 2 3
  2. SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing. (PMID: 26867678) Chen S … Voit R (Nature communications 2016) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  4. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S … Kenmochi N (Gene 1999) 3

Products for SNORD35A Gene

Sources for SNORD35A Gene