SNORD34 Gene (RNA Gene)

Small Nucleolar RNA, C/D Box 34

GC19P049647
GIFtS:
13
See more...

Aliases for SNORD34 Gene

Data sources for SNORD34 Gene:

Subcategory (RNA class) for SNORD34 Gene

snoRNA

Aliases for SNORD34 Gene

External Ids for SNORD34 Gene

Previous HGNC Symbols for SNORD34 Gene

  • RNU34

Previous GeneCards Identifiers for SNORD34 Gene

  • GC19P054725
  • GC19P054732
  • GC19P054739
  • GC19P054746
  • GC19P054752
  • GC19P054758
  • GC19P054770
  • GC19P054783
  • GC19P049995
  • GC19P050011
  • GC19P050024
  • GC19P050044
  • GC19P049492
  • GC19P049500
  • GC19P049564
  • GC19P049572
  • GC19P049577
  • GC19P049602
  • GC19P049505
  • GC19P049516
  • GC19P049520
  • GC19P049522
  • GC19P049526
  • GC19P049543
  • GC19P049558
  • GC19P049628

Summaries for SNORD34 Gene

GeneCards Summary for SNORD34 Gene

SNORD34 (Small Nucleolar RNA, C/D Box 34) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD34 Gene

  • Small nucleolar RNA SNORD34

Additional gene information for SNORD34 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD34 Gene

Genomics for SNORD34 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORD34 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD34 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD34 gene promoter:
  • AP-4
  • c-Ets-1
  • E47
  • GATA-1
  • NF-1
  • NF-1/L
  • STAT3
  • Tal-1beta
  • TBP

Genomic Locations for SNORD34 Gene

Latest Assembly
chr19:49,490,904-49,490,974
(GRCh38/hg38)
Size:
71 bases
Orientation:
Plus strand

Previous Assembly
chr19:49,994,164-49,994,229
(GRCh37/hg19 by Entrez Gene)
Size:
66 bases
Orientation:
Plus strand

chr19:49,994,161-49,994,231
(GRCh37/hg19 by Ensembl)
Size:
71 bases
Orientation:
Plus strand

Genomic View for SNORD34 Gene

Genes around SNORD34 on UCSC Golden Path with GeneCards custom track
SNORD34 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD34 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD34 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD34 Gene

Proteins for SNORD34 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SNORD34 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD34 Gene

Domains & Families for SNORD34 Gene

Gene Families for SNORD34 Gene

HGNC:
genes like me logo Genes that share domains with SNORD34: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD34 Gene

Function for SNORD34 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for SNORD34 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD34 Gene

Localization for SNORD34 Gene

Gene Ontology (GO) - Cellular Components for SNORD34 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD34: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD34 Gene

Pathways & Interactions for SNORD34 Gene

PathCards logo

SuperPathways for SNORD34 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD34 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD34: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD34 Gene

Drugs & Compounds for SNORD34 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for SNORD34 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD34 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005B985B_9606 snoRNA 66 4

RefSeq: NR_000019,

snoDB: SNODB234,

snOPY: Homo_sapiens300565,

ENA: AB028893.1:4087..4152:ncRNA,

URS00006283BD_9606 snoRNA 71 3

Ensembl: ENST00000365633 (view in UCSC) ,

Rfam: RF00147,

snoDB: SNODB1624,

URS0001BC2E2C_9606 snoRNA 71 1

Rfam: RF00147,

URS0001BC979C_9606 snoRNA 66 1

Rfam: RF00147,

SNORD34 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

CRISPR products for research

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD34 Gene

No ASD Table

Relevant External Links for SNORD34 Gene

GeneLoc Exon Structure for
SNORD34

No data available for mRNA/cDNA for SNORD34 Gene

Expression for SNORD34 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD34 Gene

mRNA expression in normal human tissues for SNORD34 Gene
mRNA expression by GTEx for SNORD34 GenemRNA expression by BioGPS for SNORD34 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD34

genes like me logo Genes that share expression patterns with SNORD34: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD34 Gene

Orthologs for SNORD34 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD34 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORD34 31
  • 97 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia SNORD34 31
  • 85 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Snord34 31
  • 84 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SNORD34 31
  • 83 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD34 31 31
  • 67 (a)
 OneToMany
Oppossum
(Monodelphis domestica)
 Mammalia SNORD34 31
  • 67 (a)
 OneToOne
Species where no ortholog for SNORD34 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD34 Gene

ENSEMBL:
Gene Tree for SNORD34 (if available)
TreeFam:
Gene Tree for SNORD34 (if available)

Paralogs for SNORD34 Gene

No data available for Paralogs for SNORD34 Gene

Variants for SNORD34 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD34 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORD34 Gene

Variant ID Type Subtype PubMed ID
nsv1160655 CNV deletion 26073780
nsv833862 CNV loss 17160897
nsv833863 CNV loss 17160897
nsv953599 CNV deletion 24416366
nsv960858 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495

Additional Variant Information for SNORD34 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD34

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD34 Gene

Disorders for SNORD34 Gene

Additional Disease Information for SNORD34

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD34 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD34 Gene

Publications for SNORD34 Gene

  1. SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing. (PMID: 26867678) Chen S … Voit R (Nature communications 2016) 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  3. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S … Kenmochi N (Gene 1999) 3
  4. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 3

ExternalLinks

View latest publications for SNORD34 gene in Mastermind

Products for SNORD34 Gene

Sources for SNORD34 Gene