Aliases for SNORD33 Gene

Subcategory (RNA class) for SNORD33 Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORD33 Gene

  • Small Nucleolar RNA, C/D Box 33 2 3 5
  • SNORD33 2 5 170
  • RNA, U33 Small Nucleolar 2 3
  • U33 2 3
  • U33 Small Nucleolar RNA 3
  • U33 SnoRNA 3
  • SNODB1071 177
  • SNODB22 177
  • RF00133 168
  • RNU33 3

External Ids for SNORD33 Gene

Previous HGNC Symbols for SNORD33 Gene

  • RNU33

Previous GeneCards Identifiers for SNORD33 Gene

  • GC19P054724
  • GC19P054731
  • GC19P054738
  • GC19P054745
  • GC19P054751
  • GC19P054757
  • GC19P054769
  • GC19P054782
  • GC19P049994
  • GC19P050010
  • GC19P050022
  • GC19P050043
  • GC19P049491
  • GC19P049495
  • GC19P049510
  • GC19P049514
  • GC19P049531
  • GC19P049605
  • GC19P049499
  • GC19P049502

Summaries for SNORD33 Gene

GeneCards Summary for SNORD33 Gene

SNORD33 (Small Nucleolar RNA, C/D Box 33) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD33 Gene

  • Small nucleolar RNA Z195/SNORD33/SNORD32 family

Additional gene information for SNORD33 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD33 Gene

Genomics for SNORD33 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD33 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD33 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD33 gene promoter:
  • AP-4
  • c-Ets-1
  • E47
  • FOXL1
  • GATA-1
  • STAT3
  • STAT5A
  • Tal-1beta
  • TBP

Genomic Locations for SNORD33 Gene

Genomic Locations for SNORD33 Gene
chr19:49,490,615-49,490,699
(GRCh38/hg38)
Size:
85 bases
Orientation:
Plus strand
chr19:49,993,872-49,993,956
(GRCh37/hg19)
Size:
85 bases
Orientation:
Plus strand

Genomic View for SNORD33 Gene

Genes around SNORD33 on UCSC Golden Path with GeneCards custom track
SNORD33 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD33 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD33 Gene

Proteins for SNORD33 Gene

Post-translational modifications for SNORD33 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD33 Gene

Domains & Families for SNORD33 Gene

Gene Families for SNORD33 Gene

genes like me logo Genes that share domains with SNORD33: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD33 Gene

Function for SNORD33 Gene

Phenotypes From GWAS Catalog for SNORD33 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD33 Gene

Localization for SNORD33 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD33 gene
Compartment Confidence
plasma membrane 1
extracellular 1
nucleus 1
endoplasmic reticulum 1
endosome 1
cytosol 1

Gene Ontology (GO) - Cellular Components for SNORD33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD33: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD33 Gene

Pathways & Interactions for SNORD33 Gene

PathCards logo

SuperPathways for SNORD33 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD33: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD33 Gene

Drugs & Compounds for SNORD33 Gene

No Compound Related Data Available

Transcripts for SNORD33 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD33 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000008DC88_9606 snoRNA 83 5

HGNC: 10160,

RefSeq: NR_000020,

snoDB: SNODB22,

snOPY: Homo_sapiens300564,

ENA: AB028893.1:3797..3879:ncRNA,

URS00006F4F8C_9606 snoRNA 85 3

Ensembl: ENST00000362761 (view in UCSC) ,

Rfam: RF00133,

snoDB: SNODB1071,

SNORD33 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD33 Gene

No ASD Table

Relevant External Links for SNORD33 Gene

GeneLoc Exon Structure for
SNORD33

No data available for mRNA/cDNA for SNORD33 Gene

Expression for SNORD33 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD33 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD33

genes like me logo Genes that share expression patterns with SNORD33: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD33 Gene

Orthologs for SNORD33 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD33 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD33 31
  • 100 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORD33 31
  • 91 (a)
OneToMany
Cow
(Bos Taurus)
Mammalia SNORD33 31 31 31
  • 84 (a)
OneToMany
Mouse
(Mus musculus)
Mammalia Snord33 31
  • 83 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORD33 31
  • 72 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORD33 31
  • 69 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia SNORD33 31
  • 52 (a)
ManyToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea SNORD33 31
  • 64 (a)
OneToMany
Species where no ortholog for SNORD33 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD33 Gene

ENSEMBL:
Gene Tree for SNORD33 (if available)
TreeFam:
Gene Tree for SNORD33 (if available)

Paralogs for SNORD33 Gene

No data available for Paralogs for SNORD33 Gene

Variants for SNORD33 Gene

Additional dbSNP identifiers (rs#s) for SNORD33 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD33 Gene

Variant ID Type Subtype PubMed ID
nsv1160655 CNV deletion 26073780
nsv833862 CNV loss 17160897
nsv833863 CNV loss 17160897
nsv953599 CNV deletion 24416366
nsv960858 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495

Additional Variant Information for SNORD33 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD33 Gene

Disorders for SNORD33 Gene

Additional Disease Information for SNORD33

No disorders were found for SNORD33 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD33 Gene

Publications for SNORD33 Gene

  1. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S … Kenmochi N (Gene 1999) 2 3
  2. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 2 3
  3. SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing. (PMID: 26867678) Chen S … Voit R (Nature communications 2016) 3
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD33 Gene

Sources for SNORD33 Gene