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Aliases for SNORD33 Gene
Data sources for SNORD33 Gene:
Subcategory (RNA class) for SNORD33 Gene
snoRNA
Aliases for SNORD33 Gene
- Small Nucleolar RNA, C/D Box 33 (HGNC, NCBI Entrez Gene, Ensembl)
- RNA, U33 Small Nucleolar (HGNC, NCBI Entrez Gene)
- SNORD33 (Ensembl, snOPY)
- U33 (HGNC, NCBI Entrez Gene)
- U33 Small Nucleolar RNA (NCBI Entrez Gene)
- U33 SnoRNA (NCBI Entrez Gene)
- SNODB1071 (snoDB)
- SNODB22 (snoDB)
- RF00133 (Rfam)
- RNU33 (NCBI Entrez Gene)
External Ids for SNORD33 Gene
- HGNC: 10160
- NCBI Entrez Gene: 26818
- Ensembl: ENSG00000199631
Previous HGNC Symbols for SNORD33 Gene
- RNU33
Previous GeneCards Identifiers for SNORD33 Gene
- GC19P054724
- GC19P054731
- GC19P054738
- GC19P054745
- GC19P054751
- GC19P054757
- GC19P054769
- GC19P054782
- GC19P049994
- GC19P050010
- GC19P050022
- GC19P050043
- GC19P049491
- GC19P049495
- GC19P049510
- GC19P049514
- GC19P049531
- GC19P049605
- GC19P049499
- GC19P049502
- GC19P049629
Summaries for SNORD33 Gene
GeneCards Summary for SNORD33 Gene
SNORD33 (Small Nucleolar RNA, C/D Box 33) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORD33 Gene
-
Small nucleolar RNA Z195/SNORD33/SNORD32 family
Additional gene information for SNORD33 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD33 Gene
Genomics for SNORD33 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORD33 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD33 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORD33 gene promoter:
-
- AP-4
- c-Ets-1
- E47
- FOXL1
- GATA-1
- STAT3
- STAT5A
- Tal-1beta
- TBP
Genomic Locations for SNORD33 Gene
Latest Assembly
- chr19:49,490,615-49,490,699
- (GRCh38/hg38)
- Size:
- 85 bases
- Orientation:
- Plus strand
Previous Assembly
- chr19:49,993,874-49,993,956
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 83 bases
- Orientation:
- Plus strand
- chr19:49,993,872-49,993,956
- (GRCh37/hg19 by Ensembl)
- Size:
- 85 bases
- Orientation:
- Plus strand
Genomic View for SNORD33 Gene
Genes around SNORD33 on UCSC Golden Path with GeneCards custom track
SNORD33 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 19q13.33 by HGNC
- 19q13.33 by Entrez Gene
- 19q13.33 by Ensembl
SNORD33 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD33 Gene
Proteins for SNORD33 Gene
Post-translational modifications for SNORD33 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORD33 Gene
Domains & Families for SNORD33 Gene
Gene Families for SNORD33 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD33 Gene
Function for SNORD33 Gene
Phenotypes From GWAS Catalog for SNORD33 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD33 - Starting at $85 >
- * SNORD33 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD33 Gene
Localization for SNORD33 Gene
| Compartment | Confidence |
|---|---|
| extracellular | 1 |
| nucleus | 1 |
| cytosol | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD33 Gene
Pathways & Interactions for SNORD33 Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD33 Gene
Transcripts for SNORD33 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD33 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000008DC88_9606 | snoRNA | 83 | 4 |
RefSeq: NR_000020, snoDB: SNODB22, snOPY: Homo_sapiens300564, |
| URS00006F4F8C_9606 | snoRNA | 85 | 3 |
Ensembl: ENST00000362761 (view in UCSC) , Rfam: RF00133, snoDB: SNODB1071, |
| URS0001BC6316_9606 | snoRNA | 85 | 1 |
Rfam: RF00133, |
SNORD33 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD33 - Starting at $85 >
- * SNORD33 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
Relevant External Links for SNORD33 Gene
- GeneLoc Exon Structure for
- SNORD33
No data available for mRNA/cDNA for SNORD33 Gene
Expression for SNORD33 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD33
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD33 Gene
Orthologs for SNORD33 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SNORD33 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SNORD33 31 |
|
OneToMany | |
| Cow (Bos Taurus) |
Mammalia | SNORD33 31 31 31 |
|
OneToMany | |
| Mouse (Mus musculus) |
Mammalia | Snord33 31 |
|
OneToOne | |
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SNORD33 31 |
|
ManyToMany | |
| Oppossum (Monodelphis domestica) |
Mammalia | SNORD33 31 |
|
ManyToMany | |
| Lizard (Anolis carolinensis) |
Reptilia | SNORD33 31 |
|
ManyToMany | |
| Sea Squirt (Ciona savignyi) |
Ascidiacea | SNORD33 31 |
|
OneToMany |
- Species where no ortholog for SNORD33 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for SNORD33 Gene
No data available for Paralogs for SNORD33 Gene
Variants for SNORD33 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for SNORD33 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD33
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD33 Gene
Disorders for SNORD33 Gene
Additional Disease Information for SNORD33
No disorders were found for SNORD33 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD33 Gene
Publications for SNORD33 Gene
- Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S … Kenmochi N (Gene 1999) 2 3
- Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 2 3
- SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing. (PMID: 26867678) Chen S … Voit R (Nature communications 2016) 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
ExternalLinks
Products for SNORD33 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD33
- Origene Custom Protein Services for SNORD33
- Browse OriGene Inhibitory RNA Products For SNORD33
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD33
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD33
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD33
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD33
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD33
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD33
Sources for SNORD33 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB