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SNORD33 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 33

GCID:
GC19P049510
GIFtS:
15
Genes Participants
UDN Logo

Aliases for SNORD33 Gene

Subcategory (RNA class) for SNORD33 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD33 Gene

  • Small Nucleolar RNA, C/D Box 33 2 3 5
  • RNA, U33 Small Nucleolar 2 3
  • U33 Small Nucleolar RNA 3
  • U33 SnoRNA 3
  • RNU33 3
  • U33 3

External Ids for SNORD33 Gene

ORGUL Members for SNORD33 Gene

Previous HGNC Symbols for SNORD33 Gene

  • RNU33

Previous GeneCards Identifiers for SNORD33 Gene

  • GC19P054724
  • GC19P054731
  • GC19P054738
  • GC19P054745
  • GC19P054751
  • GC19P054757
  • GC19P054769
  • GC19P054782
  • GC19P049994
  • GC19P050010
  • GC19P050022
  • GC19P050043
  • GC19P049491
  • GC19P049495
  • GC19P049499
  • GC19P049502

Summaries for SNORD33 Gene

GeneCards Summary for SNORD33 Gene

SNORD33 (Small Nucleolar RNA, C/D Box 33) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD33 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD33 Gene

Genomics for SNORD33 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD33 Gene

Promoters and enhancers for SNORD33 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J049486 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 650.7 -0.4 -375 7.5 ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 NFYC SSRP1 SNORD35A RPL13A GC19P049514 GC19P049531 GC19P049558 GC19P049559 GC19P049564 GC19P049569 PIR54526 SNORD32A
GH19J049511 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 12.9 +23.7 23741 5.7 HDGF PKNOX1 MLX ARID4B SIN3A ZNF48 TCF12 ZNF121 GLIS2 RUNX3 FCGRT PRR12 RCN3 SNORD32A SNORD33 SNORD34 SNORD35A RPL13A PRRG2 NOSIP
GH19J049558 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 11.9 +70.1 70110 4.3 HDAC1 BCOR TFAP4 ZMYM3 ZNF664 ZFHX2 FOXK2 EGR1 ADNP VEZF1 NOSIP PIR42034 PRR12 RCN3 FCGRT MIR150 RPS11 SNORD35B SNORD34 SNORD35A
GH19J049552 Enhancer 1.2 Ensembl ENCODE dbSUPER 12 +64.7 64735 5.7 PKNOX1 FOXA2 ARID4B ZNF143 MIXL1 EGR2 ZNF362 ZNF623 NR2F2 PCBP2 NOSIP PRR12 SNORD35A SNORD35B RPS11 RPL13A FCGRT ALDH16A1 POLD1 RCN3
GH19J049457 Enhancer 1 Ensembl ENCODE dbSUPER 11.7 -32.2 -32249 1.6 HDGF ZNF687 HCFC1 L3MBTL2 NR2F1 EBF1 DPF2 ZNF592 IKZF1 NBN RPL13A SNORD32A SNORD33 SNORD34 SNORD35A SLC6A16 CD37 FLT3LG ENSG00000269469 PIH1D1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD33 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD33 gene promoter:
  • TBP
  • STAT3
  • GATA-1
  • c-Ets-1
  • E47
  • Tal-1beta
  • AP-4
  • STAT5A
  • FOXL1

Genomic Locations for SNORD33 Gene

Genomic Locations for SNORD33 Gene
chr19:49,490,615-49,490,699
(GRCh38/hg38)
Size:
85 bases
Orientation:
Plus strand
chr19:49,993,872-49,993,956
(GRCh37/hg19)
Size:
85 bases
Orientation:
Plus strand

Genomic View for SNORD33 Gene

Genes around SNORD33 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD33 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD33 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD33 Gene

Proteins for SNORD33 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD33 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD33 Gene

Domains & Families for SNORD33 Gene

Gene Families for SNORD33 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD33: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD33 Gene

Function for SNORD33 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD33 Gene

Localization for SNORD33 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD33 Gene

Pathways & Interactions for SNORD33 Gene

SuperPathways for SNORD33 Gene

PathCards logo More details on SuperPathways for SNORD33
No Data Available

Interacting Proteins for SNORD33 Gene

Gene Ontology (GO) - Biological Process for SNORD33 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD33 Gene

Drugs & Compounds for SNORD33 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD33 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD33 Gene

(55) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD33 Gene

No ASD Table

Relevant External Links for SNORD33 Gene

GeneLoc Exon Structure for
SNORD33
ECgene alternative splicing isoforms for
SNORD33

Expression for SNORD33 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD33 Gene

mRNA expression in normal human tissues for SNORD33 Gene
mRNA expression by GTEx for SNORD33 GenemRNA expression by BioGPS for SNORD33 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD33 Gene:

SNORD33
genes like me logo Genes that share expression patterns with SNORD33: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD33 Gene

Orthologs for SNORD33 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD33 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD33 34
  • 100 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD33 34
  • 91 (a)
 OneToMany
cow
(Bos Taurus)
 Mammalia SNORD33 34 34 34
  • 85 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Snord33 34
  • 83 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD33 34
  • 72 (a)
 ManyToMany
oppossum
(Monodelphis domestica)
 Mammalia SNORD33 34
  • 69 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia SNORD33 34
  • 52 (a)
 ManyToMany
sea squirt
(Ciona savignyi)
 Ascidiacea SNORD33 34
  • 64 (a)
 OneToMany
Species where no ortholog for SNORD33 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD33 Gene

ENSEMBL:
Gene Tree for SNORD33 (if available)
TreeFam:
Gene Tree for SNORD33 (if available)

Paralogs for SNORD33 Gene

No data available for Paralogs for SNORD33 Gene

Variants for SNORD33 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD33 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1001127408 -- 49,489,093(+) G/A upstream_transcript_variant
rs1001661897 -- 49,489,294(+) AAGA/AAGAAGA upstream_transcript_variant
rs1001944060 -- 49,489,496(+) T/C upstream_transcript_variant
rs1006140111 -- 49,489,791(+) T/C upstream_transcript_variant
rs1006729505 -- 49,488,875(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD33 Gene

Variant ID Type Subtype PubMed ID
nsv1160655 CNV deletion 26073780
nsv833862 CNV loss 17160897
nsv833863 CNV loss 17160897
nsv953599 CNV deletion 24416366
nsv960858 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495

Additional Variant Information for SNORD33 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD33 Gene

Disorders for SNORD33 Gene

Additional Disease Information for SNORD33

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD33 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD33 Gene

Publications for SNORD33 Gene

  1. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S … Kenmochi N (Gene 1999) 2 3 58
  2. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD33 Gene

Sources for SNORD33 Gene

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