SNORD32B Gene (RNA Gene)

Small Nucleolar RNA, C/D Box 32B

GC06P047249
GIFtS:
12
See more...

Aliases for SNORD32B Gene

Subcategory (RNA class) for SNORD32B Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD32B Gene

  • Small Nucleolar RNA, C/D Box 32B 2 3 5
  • SNORD32B 2 5 170
  • U32B 2 3
  • SNODB1348 177
  • SNODB1346 177
  • SNODB1349 177
  • SNODB1788 177
  • SNODB1347 177
  • SNODB1350 177

External Ids for SNORD32B Gene

Additional External Ids for SNORD32B Gene

Previous GeneCards Identifiers for SNORD32B Gene

  • GC06U900828
  • GC06P029660
  • GC06P029662
  • GC06P029551
  • GC06P029357
  • GC06P029558
  • GC06P029640
  • GC06P029785
  • GC06P029995
  • GC06P030171
  • GC06P029815
  • GC06P030077
  • GC06P032161
  • GC06P032407
  • GC06P032545
  • GC06P033157
  • GC06P030323
  • GC06P030475
  • GC06P030674
  • GC06P030838
  • GC06P030999
  • GC06P031156
  • GC06P031328
  • GC06P031571

Summaries for SNORD32B Gene

GeneCards Summary for SNORD32B Gene

SNORD32B (Small Nucleolar RNA, C/D Box 32B) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD32B include Miller-Dieker Lissencephaly Syndrome.

Rfam classification for SNORD32B Gene

  • Small nucleolar RNA Z195/SNORD33/SNORD32 family

Additional gene information for SNORD32B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD32B Gene

Genomics for SNORD32B Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data

Top Transcription factor binding sites by QIAGEN in the SNORD32B gene promoter:
  • E47
  • Egr-3
  • Hand1
  • Nkx3-1
  • Nkx3-1 v1
  • Nkx3-1 v2
  • YY1

Genomic Locations for SNORD32B Gene

Genomic Locations for SNORD32B Gene
chr6:29,582,249-29,582,332
(GRCh38/hg38)
Size:
84 bases
Orientation:
Plus strand
chr6:29,550,026-29,550,109
(GRCh37/hg19)
Size:
84 bases
Orientation:
Plus strand

Genomic View for SNORD32B Gene

Genes around SNORD32B on UCSC Golden Path with GeneCards custom track
SNORD32B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD32B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD32B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

Proteins for SNORD32B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD32B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD32B Gene

Domains & Families for SNORD32B Gene

Gene Families for SNORD32B Gene

HGNC:
genes like me logo Genes that share domains with SNORD32B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD32B Gene

Function for SNORD32B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORD32B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD32B Gene

Localization for SNORD32B Gene

Gene Ontology (GO) - Cellular Components for SNORD32B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD32B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD32B Gene

Pathways & Interactions for SNORD32B Gene

PathCards logo

SuperPathways for SNORD32B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD32B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD32B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD32B Gene

Drugs & Compounds for SNORD32B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD32B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD32B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006A6778_9606 snoRNA 84 3

Ensembl: ENST00000364460 (view in UCSC) , ENST00000578141 (view in UCSC) , ENST00000578860 (view in UCSC) , ENST00000580093 (view in UCSC) , ENST00000580950 (view in UCSC) ,

Rfam: RF00133,

snoDB: SNODB752, SNODB753, SNODB754, SNODB755, SNODB756,

URS000075DEC0_9606 snoRNA 77 3

HGNC: 32719,

RefSeq: NR_003049,

snoDB: SNODB1345, SNODB1346, SNODB1347, SNODB1348, SNODB1349,

URS0000825739_9606 snoRNA 82 2

snoDB: SNODB1807,

snOPY: Homo_sapiens300249,

SNORD32B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD32B Gene

No ASD Table

Relevant External Links for SNORD32B Gene

GeneLoc Exon Structure for
SNORD32B

No data available for mRNA/cDNA for SNORD32B Gene

Expression for SNORD32B Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD32B Gene

mRNA expression in normal human tissues for SNORD32B Gene
mRNA expression by GTEx for SNORD32B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD32B

genes like me logo Genes that share expression patterns with SNORD32B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD32B Gene

Orthologs for SNORD32B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD32B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORD33 31
  • 99 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia SNORD33 31
  • 88 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD33 31 31 31 31 31
  • 80 (a)
 ManyToMany
Oppossum
(Monodelphis domestica)
 Mammalia SNORD33 31
  • 78 (a)
 OneToMany
Mouse
(Mus musculus)
 Mammalia Gm26252 31
  • 74 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SNORD33 31
  • 59 (a)
 ManyToMany
Lizard
(Anolis carolinensis)
 Reptilia SNORD33 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31 31
  • 39 (a)
 ManyToMany
Zebrafish
(Danio rerio)
 Actinopterygii SNORD33 31 31
  • 62 (a)
 ManyToMany
Sea Squirt
(Ciona savignyi)
 Ascidiacea SNORD33 31
  • 55 (a)
 OneToMany
Species where no ortholog for SNORD32B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD32B Gene

ENSEMBL:
Gene Tree for SNORD32B (if available)
TreeFam:
Gene Tree for SNORD32B (if available)

Paralogs for SNORD32B Gene

No data available for Paralogs for SNORD32B Gene

Variants for SNORD32B Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for SNORD32B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD32B Gene

Variant ID Type Subtype PubMed ID
dgv376n21 CNV loss 19592680
esv2302804 CNV deletion 18987734
esv2504304 CNV deletion 19546169
esv2759411 CNV gain+loss 17122850
esv3608481 CNV loss 21293372
esv3608482 CNV loss 21293372
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259
nsv519288 CNV loss 19592680
nsv5239 CNV deletion 18451855

Additional Variant Information for SNORD32B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD32B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD32B Gene

Disorders for SNORD32B Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD32B Gene - From: DISEASES

Disorder Aliases PubMed IDs
miller-dieker lissencephaly syndrome
  • mdls
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD32B

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with SNORD32B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD32B Gene

Publications for SNORD32B Gene

  1. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

ExternalLinks

View latest publications for SNORD32B gene in Mastermind

Products for SNORD32B Gene

Sources for SNORD32B Gene