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SNORD32B Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 32B

GCID:
GC06P031328
GIFtS:
12
Genes Participants
UDN Logo

Aliases for SNORD32B Gene

Subcategory (RNA class) for SNORD32B Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SNORD32B Gene

  • Small Nucleolar RNA, C/D Box 32B 2 3 5
  • U32B 3

External Ids for SNORD32B Gene

Previous GeneCards Identifiers for SNORD32B Gene

  • GC06U900828
  • GC06P029660
  • GC06P029662
  • GC06P029551
  • GC06P029357
  • GC06P029558
  • GC06P029640
  • GC06P029785
  • GC06P029995
  • GC06P030171
  • GC06P029815
  • GC06P030077
  • GC06P030323
  • GC06P030475
  • GC06P030674
  • GC06P030838
  • GC06P030999
  • GC06P031156

Summaries for SNORD32B Gene

GeneCards Summary for SNORD32B Gene

SNORD32B (Small Nucleolar RNA, C/D Box 32B) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNORD32B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD32B Gene

Genomics for SNORD32B Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD32B Gene


Top Transcription factor binding sites by QIAGEN in the SNORD32B gene promoter:
  • E47
  • YY1
  • Hand1
  • Egr-3
  • Nkx3-1
  • Nkx3-1 v1
  • Nkx3-1 v2

Genomic Locations for SNORD32B Gene

Genomic Locations for SNORD32B Gene
chr6:29,582,249-29,582,332
(GRCh38/hg38)
Size:
84 bases
Orientation:
Plus strand
chr6:29,550,026-29,550,109
(GRCh37/hg19)
Size:
84 bases
Orientation:
Plus strand

Genomic View for SNORD32B Gene

Genes around SNORD32B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD32B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD32B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD32B Gene

Proteins for SNORD32B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD32B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD32B Gene

Domains & Families for SNORD32B Gene

Gene Families for SNORD32B Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD32B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD32B Gene

Function for SNORD32B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD32B Gene

Localization for SNORD32B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD32B Gene

Pathways & Interactions for SNORD32B Gene

SuperPathways for SNORD32B Gene

PathCards logo More details on SuperPathways for SNORD32B
No Data Available

Interacting Proteins for SNORD32B Gene

Gene Ontology (GO) - Biological Process for SNORD32B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD32B Gene

Drugs & Compounds for SNORD32B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD32B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD32B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD32B Gene

No ASD Table

Relevant External Links for SNORD32B Gene

GeneLoc Exon Structure for
SNORD32B
ECgene alternative splicing isoforms for
SNORD32B

Expression for SNORD32B Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD32B Gene

mRNA expression in normal human tissues for SNORD32B Gene
mRNA expression by GTEx for SNORD32B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD32B Gene:

SNORD32B
genes like me logo Genes that share expression patterns with SNORD32B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD32B Gene

Orthologs for SNORD32B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD32B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD33 34
  • 99 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD33 34
  • 88 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD33 34 34 34 34 34
  • 80 (a)
 ManyToMany
oppossum
(Monodelphis domestica)
 Mammalia SNORD33 34
  • 78 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Gm26252 34
  • 74 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD33 34
  • 59 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia SNORD33 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34 34
  • 68 (a)
 ManyToMany
zebrafish
(Danio rerio)
 Actinopterygii SNORD33 34 34
  • 62 (a)
 ManyToMany
sea squirt
(Ciona savignyi)
 Ascidiacea SNORD33 34
  • 55 (a)
 OneToMany
Species where no ortholog for SNORD32B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD32B Gene

ENSEMBL:
Gene Tree for SNORD32B (if available)
TreeFam:
Gene Tree for SNORD32B (if available)

Paralogs for SNORD32B Gene

No data available for Paralogs for SNORD32B Gene

Variants for SNORD32B Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD32B Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000079829 -- 29,580,449(+) C/T upstream_transcript_variant
rs1001671879 -- 29,580,496(+) G/A upstream_transcript_variant
rs1002122294 -- 29,580,835(+) T/G upstream_transcript_variant
rs1002640681 -- 29,581,942(+) T/C upstream_transcript_variant
rs1004945841 -- 29,580,459(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD32B Gene

Variant ID Type Subtype PubMed ID
nsv5239 CNV deletion 18451855
nsv519288 CNV loss 19592680
nsv1145096 CNV deletion 24896259
nsv1122126 CNV deletion 24896259
nsv1074389 CNV deletion 25765185
esv3608482 CNV loss 21293372
esv3608481 CNV loss 21293372
esv2759411 CNV gain+loss 17122850
esv2504304 CNV deletion 19546169
esv2302804 CNV deletion 18987734
dgv376n21 CNV loss 19592680

Additional Variant Information for SNORD32B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD32B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD32B Gene

Disorders for SNORD32B Gene

Additional Disease Information for SNORD32B

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD32B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD32B Gene

Publications for SNORD32B Gene

  1. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD32B Gene

Sources for SNORD32B Gene

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