Aliases for SNORD32A Gene

Data sources for SNORD32A Gene:

Subcategory (RNA class) for SNORD32A Gene

snoRNA

Aliases for SNORD32A Gene

External Ids for SNORD32A Gene

Previous HGNC Symbols for SNORD32A Gene

  • RNU32

Previous GeneCards Identifiers for SNORD32A Gene

  • GC19P054723
  • GC19P054730
  • GC19P054737
  • GC19P054744
  • GC19P054750
  • GC19P054756
  • GC19P054768
  • GC19P054780
  • GC19P049993

Summaries for SNORD32A Gene

GeneCards Summary for SNORD32A Gene

SNORD32A (Small Nucleolar RNA, C/D Box 32A) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD32A Gene

  • Small nucleolar RNA Z195/SNORD33/SNORD32 family

Additional gene information for SNORD32A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD32A Gene

Genomics for SNORD32A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD32A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD32A on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD32A gene promoter:
  • AP-4
  • c-Ets-1
  • E47
  • FOXL1
  • RFX1
  • STAT3
  • STAT5A
  • Tal-1beta
  • TBP

Genomic Locations for SNORD32A Gene

Latest Assembly
chr19:49,489,965-49,490,048
(GRCh38/hg38)
Size:
84 bases
Orientation:
Plus strand

Previous Assembly
chr19:49,993,223-49,993,304
(GRCh37/hg19 by Entrez Gene)
Size:
82 bases
Orientation:
Plus strand

chr19:49,993,222-49,993,305
(GRCh37/hg19 by Ensembl)
Size:
84 bases
Orientation:
Plus strand

Genomic View for SNORD32A Gene

Genes around SNORD32A on UCSC Golden Path with GeneCards custom track
SNORD32A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD32A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD32A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD32A Gene

Proteins for SNORD32A Gene

Post-translational modifications for SNORD32A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD32A Gene

Domains & Families for SNORD32A Gene

Gene Families for SNORD32A Gene

genes like me logo Genes that share domains with SNORD32A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD32A Gene

Function for SNORD32A Gene

Phenotypes From GWAS Catalog for SNORD32A Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD32A Gene

Localization for SNORD32A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD32A gene
Compartment Confidence
extracellular 1
mitochondrion 1
nucleus 1
endoplasmic reticulum 1
cytosol 1

Gene Ontology (GO) - Cellular Components for SNORD32A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD32A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD32A Gene

Pathways & Interactions for SNORD32A Gene

PathCards logo

SuperPathways for SNORD32A Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD32A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD32A: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD32A Gene

Drugs & Compounds for SNORD32A Gene

No Compound Related Data Available

Transcripts for SNORD32A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD32A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006D7506_9606 snoRNA 84 3

Ensembl: ENST00000364805 (view in UCSC) ,

Rfam: RF00133,

snoDB: SNODB957,

URS000050B350_9606 snoRNA 82 3

RefSeq: NR_000021,

snoDB: SNODB207,

ENA: AB028893.1:3145..3226:ncRNA,

URS000081FDDB_9606 snoRNA 77 2

snoDB: SNODB1403,

snOPY: Homo_sapiens300563,

URS0001BC9D84_9606 snoRNA 82 1

Rfam: RF00133,

URS0001BC98F9_9606 snoRNA 81 1

Rfam: RF00133,

SNORD32A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD32A Gene

No ASD Table

Relevant External Links for SNORD32A Gene

GeneLoc Exon Structure for
SNORD32A

No data available for mRNA/cDNA for SNORD32A Gene

Expression for SNORD32A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD32A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD32A

genes like me logo Genes that share expression patterns with SNORD32A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD32A Gene

Orthologs for SNORD32A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD32A Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD33 31
  • 100 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORD33 31
  • 94 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snord32a 31
  • 88 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORD33 31 31
  • 85 (a)
ManyToMany
Oppossum
(Monodelphis domestica)
Mammalia SNORD33 31
  • 81 (a)
OneToMany
Dog
(Canis familiaris)
Mammalia SNORD33 31
  • 51 (a)
ManyToMany
Lizard
(Anolis carolinensis)
Reptilia SNORD33 31
  • 63 (a)
ManyToMany
Zebrafish
(Danio rerio)
Actinopterygii SNORD33 31 31
  • 65 (a)
ManyToMany
Sea Squirt
(Ciona savignyi)
Ascidiacea SNORD33 31
  • 53 (a)
OneToMany
Species where no ortholog for SNORD32A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD32A Gene

ENSEMBL:
Gene Tree for SNORD32A (if available)
TreeFam:
Gene Tree for SNORD32A (if available)

Paralogs for SNORD32A Gene

No data available for Paralogs for SNORD32A Gene

Variants for SNORD32A Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD32A Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORD32A Gene

Variant ID Type Subtype PubMed ID
nsv1160655 CNV deletion 26073780
nsv833862 CNV loss 17160897
nsv833863 CNV loss 17160897
nsv953599 CNV deletion 24416366
nsv960858 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495

Additional Variant Information for SNORD32A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD32A

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD32A Gene

Disorders for SNORD32A Gene

Additional Disease Information for SNORD32A

No disorders were found for SNORD32A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD32A Gene

Publications for SNORD32A Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  2. Gene organization and sequence of the region containing the ribosomal protein genes RPL13A and RPS11 in the human genome and conserved features in the mouse genome. (PMID: 10580157) Higa S … Kenmochi N (Gene 1999) 3
  3. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. (PMID: 8764399) Nicoloso M … Bachellerie JP (Journal of molecular biology 1996) 3

Products for SNORD32A Gene

Sources for SNORD32A Gene