Aliases for SNORD31 Gene

Data sources for SNORD31 Gene:

Subcategory (RNA class) for SNORD31 Gene

snoRNA

Aliases for SNORD31 Gene

External Ids for SNORD31 Gene

Previous HGNC Symbols for SNORD31 Gene

  • RNU31

Previous GeneCards Identifiers for SNORD31 Gene

  • GC11M062394
  • GC11M062402
  • GC11M062412
  • GC11M062421
  • GC11M062622
  • GC11M058950
  • GC11M062666
  • GC11M062855
  • GC11M062864
  • GC11M062969
  • GC11M062996
  • GC11M063022
  • GC11M063086
  • GC11M062872
  • GC11M062878
  • GC11M062888
  • GC11M062896
  • GC11M062904
  • GC11M062912
  • GC11M062920
  • GC11M062936
  • GC11M063449

Summaries for SNORD31 Gene

GeneCards Summary for SNORD31 Gene

SNORD31 (Small Nucleolar RNA, C/D Box 31) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD31 include Frontal Sinusitis.

Rfam classification for SNORD31 Gene

  • Small nucleolar RNA SNORD31

Additional gene information for SNORD31 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD31 Gene

Genomics for SNORD31 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD31 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062851 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -4.4 -4365 13.4 BCL11A SP1 MXD4 FEZF1 CEBPA MNT DEK IKZF1 SMAD5 ETS1 SNHG1 NXF1 SLC3A2 piR-40154-030 piR-40163-016 piR-52261-046 CSKMT MTA2 LOC105369332 GANAB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD31 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD31 gene promoter:
  • AP-1
  • ATF-2
  • c-Jun
  • SREBP-1b
  • SREBP-1c

Genomic Locations for SNORD31 Gene

Latest Assembly
chr11:62,853,325-62,853,395
(GRCh38/hg38)
Size:
71 bases
Orientation:
Minus strand

Previous Assembly
chr11:62,620,798-62,620,865
(GRCh37/hg19 by Entrez Gene)
Size:
68 bases
Orientation:
Minus strand

Genomic View for SNORD31 Gene

Genes around SNORD31 on UCSC Golden Path with GeneCards custom track
SNORD31 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD31 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD31 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD31 Gene

Proteins for SNORD31 Gene

Post-translational modifications for SNORD31 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD31 Gene

Domains & Families for SNORD31 Gene

Gene Families for SNORD31 Gene

genes like me logo Genes that share domains with SNORD31: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD31 Gene

Function for SNORD31 Gene

Phenotypes From GWAS Catalog for SNORD31 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD31 Gene

Localization for SNORD31 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD31 gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD31 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD31: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD31 Gene

Pathways & Interactions for SNORD31 Gene

PathCards logo

SuperPathways for SNORD31 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD31 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD31: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD31 Gene

Drugs & Compounds for SNORD31 Gene

No Compound Related Data Available

Transcripts for SNORD31 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD31 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000130A5F_9606 snoRNA 68 3

RefSeq: NR_002560,

snoDB: SNODB49,

ENA: U40580.1:2989..3056:ncRNA,

URS000066CF48_9606 snoRNA 71 3

Rfam: RF00089,

snoDB: SNODB1908,

snOPY: Homo_sapiens300163,

URS0001BBF00E_9606 snoRNA 71 1

Rfam: RF00089,

SNORD31 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD31 Gene

No ASD Table

Relevant External Links for SNORD31 Gene

GeneLoc Exon Structure for
SNORD31

No data available for mRNA/cDNA for SNORD31 Gene

Expression for SNORD31 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD31

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD31 Gene

Orthologs for SNORD31 Gene

No data available for Orthologs and Evolution for SNORD31 Gene

Paralogs for SNORD31 Gene

No data available for Paralogs for SNORD31 Gene

Variants for SNORD31 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD31 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORD31 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD31 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD31

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD31 Gene

Disorders for SNORD31 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD31 Gene - From: COP

Disorder Aliases PubMed IDs
frontal sinusitis
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD31

genes like me logo Genes that share disorders with SNORD31: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD31 Gene

Publications for SNORD31 Gene

  1. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3
  2. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
  4. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3

Products for SNORD31 Gene

Sources for SNORD31 Gene