Free for academic non-profit institutions. Other users need a Commercial license

SNORD31 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 31

GCID:
GC11M062912
GIFtS:
13
Genes Participants
UDN Logo

Aliases for SNORD31 Gene

Subcategory (RNA class) for SNORD31 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD31 Gene

  • Small Nucleolar RNA, C/D Box 31 2 3
  • RNA, U31 Small Nucleolar 2 3
  • SNORD31A 3
  • RNU31 3
  • U31 3

External Ids for SNORD31 Gene

ORGUL Members for SNORD31 Gene

Previous HGNC Symbols for SNORD31 Gene

  • RNU31

Previous GeneCards Identifiers for SNORD31 Gene

  • GC11M062394
  • GC11M062402
  • GC11M062412
  • GC11M062421
  • GC11M062622
  • GC11M058950
  • GC11M062666
  • GC11M062855
  • GC11M062864
  • GC11M062872
  • GC11M062878
  • GC11M062888
  • GC11M062896
  • GC11M062904

Summaries for SNORD31 Gene

GeneCards Summary for SNORD31 Gene

SNORD31 (Small Nucleolar RNA, C/D Box 31) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD31 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD31 Gene

Genomics for SNORD31 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD31 Gene

Promoters and enhancers for SNORD31 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11I062851 Enhancer 1.1 Ensembl ENCODE 550.8 +1.5 1536 1.6 HNRNPUL1 PKNOX1 SMAD1 FOXA2 ARNT NSD2 TCF12 POLR2B E2F8 PAF1 GC11M062921 GC11M062922 GC11M062924 SNORD22 SNORD30 SNORD31 SNHG1 NXF1 UBXN1 CSKMT
GH11I062852 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.8 -2.4 -2444 5.9 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SNHG1 SLC3A2 ENSG00000278527 GC11M062911 GC11M062919 GC11M062920 GC11M062923 GC11M062925 GC11M062930 SNORD25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD31 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD31 gene promoter:

Genomic Locations for SNORD31 Gene

Genomic Locations for SNORD31 Gene
chr11:62,853,326-62,853,393
(GRCh38/hg38)
Size:
68 bases
Orientation:
Minus strand
chr11:62,619,460-62,623,386
(GRCh37/hg19)

Genomic View for SNORD31 Gene

Genes around SNORD31 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD31 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD31 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD31 Gene

Proteins for SNORD31 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD31 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD31 Gene

Domains & Families for SNORD31 Gene

Gene Families for SNORD31 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD31: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD31 Gene

Function for SNORD31 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD31 Gene

Localization for SNORD31 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD31 Gene

Pathways & Interactions for SNORD31 Gene

SuperPathways for SNORD31 Gene

PathCards logo More details on SuperPathways for SNORD31
No Data Available

Interacting Proteins for SNORD31 Gene

Gene Ontology (GO) - Biological Process for SNORD31 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD31 Gene

Drugs & Compounds for SNORD31 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD31 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD31 Gene

No ASD Table

Relevant External Links for SNORD31 Gene

GeneLoc Exon Structure for
SNORD31
ECgene alternative splicing isoforms for
SNORD31

No data available for mRNA/cDNA for SNORD31 Gene

Expression for SNORD31 Gene

Products:

  1. Primer

NURSA nuclear receptor signaling pathways regulating expression of SNORD31 Gene:

SNORD31
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD31 Gene

Orthologs for SNORD31 Gene

No data available for Orthologs and Evolution for SNORD31 Gene

Paralogs for SNORD31 Gene

No data available for Paralogs for SNORD31 Gene

Variants for SNORD31 Gene

Sequence variations from dbSNP and Humsavar for SNORD31 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000055291 -- 62,855,272(-) T/G upstream_transcript_variant
rs1001419761 -- 62,855,320(-) T/C upstream_transcript_variant
rs1003457092 -- 62,853,276(-) C/G downstream_transcript_variant
rs1003477388 -- 62,853,524(-) T/C upstream_transcript_variant
rs1004821910 -- 62,855,267(-) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD31 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD31 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD31

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD31 Gene

Disorders for SNORD31 Gene

Additional Disease Information for SNORD31

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD31 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD31 Gene

Publications for SNORD31 Gene

  1. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3 58

Products for SNORD31 Gene

Sources for SNORD31 Gene

Content
Loading form....