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Aliases for SNORD30 Gene

Subcategory (RNA class) for SNORD30 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD30 Gene

  • Small Nucleolar RNA, C/D Box 30 2 3 5
  • RNA, U30 Small Nucleolar 2 3
  • RNU30 3
  • U30 3

External Ids for SNORD30 Gene

ORGUL Members for SNORD30 Gene

Previous HGNC Symbols for SNORD30 Gene

  • RNU30

Previous GeneCards Identifiers for SNORD30 Gene

  • GC11M062395
  • GC11M062403
  • GC11M062413
  • GC11M062422
  • GC11M062625
  • GC11M058952
  • GC11M062667
  • GC11M062857
  • GC11M062866
  • GC11M062874
  • GC11M062882
  • GC11M062892
  • GC11M062898
  • GC11M062906
  • GC11M062914

Summaries for SNORD30 Gene

GeneCards Summary for SNORD30 Gene

SNORD30 (Small Nucleolar RNA, C/D Box 30) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD30 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD30 Gene

Genomics for SNORD30 Gene

GeneHancer (GH) Regulatory Elements for SNORD30 Gene

Promoters and enhancers for SNORD30 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062851 Enhancer 1.1 Ensembl ENCODE 650.7 +1.9 1875 1.6 HNRNPUL1 PKNOX1 SMAD1 FOXA2 ARNT TCF12 POLR2B E2F8 PAF1 REST GC11M062932 GC11M062933 GC11M062936 SNORD22 SNORD30 SNORD31 SNHG1 NXF1 UBXN1 CSKMT
GH11J062852 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.1 -2105 5.9 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NXF1 SNHG1 SLC3A2 ENSG00000278527 GC11M062919 GC11M062925 GC11M062934 GC11M062938 GC11M062939 GC11M062942
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD30 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD30 gene promoter:
  • AP-1
  • c-Jun
  • ATF-2
  • SREBP-1c
  • SREBP-1b

Genomic Locations for SNORD30 Gene

Genomic Locations for SNORD30 Gene
chr11:62,853,663-62,853,732
(GRCh38/hg38)
Size:
70 bases
Orientation:
Minus strand
chr11:62,619,460-62,623,386
(GRCh37/hg19)
Size:
3,927 bases
Orientation:
Minus strand

Genomic View for SNORD30 Gene

Genes around SNORD30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD30 Gene

Proteins for SNORD30 Gene

Post-translational modifications for SNORD30 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD30 Gene

Domains & Families for SNORD30 Gene

Gene Families for SNORD30 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD30: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD30 Gene

Function for SNORD30 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD30 Gene

Localization for SNORD30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD30 Gene

Pathways & Interactions for SNORD30 Gene

SuperPathways for SNORD30 Gene

No Data Available

Interacting Proteins for SNORD30 Gene

Gene Ontology (GO) - Biological Process for SNORD30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD30 Gene

Drugs & Compounds for SNORD30 Gene

No Compound Related Data Available

Transcripts for SNORD30 Gene

mRNA/cDNA for SNORD30 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD30 Gene

No ASD Table

Relevant External Links for SNORD30 Gene

GeneLoc Exon Structure for
SNORD30
ECgene alternative splicing isoforms for
SNORD30

Expression for SNORD30 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD30 Gene:

SNORD30
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD30 Gene

Orthologs for SNORD30 Gene

Evolution for SNORD30 Gene

ENSEMBL:
Gene Tree for SNORD30 (if available)
TreeFam:
Gene Tree for SNORD30 (if available)

No data available for Orthologs for SNORD30 Gene

Paralogs for SNORD30 Gene

No data available for Paralogs for SNORD30 Gene

Variants for SNORD30 Gene

Sequence variations from dbSNP and Humsavar for SNORD30 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000055291 -- 62,855,272(-) T/G upstream_transcript_variant
rs1001419761 -- 62,855,320(-) T/C upstream_transcript_variant
rs1003457092 -- 62,853,276(-) C/G downstream_transcript_variant
rs1003477388 -- 62,853,524(-) T/C downstream_transcript_variant
rs1004821910 -- 62,855,267(-) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD30 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD30 Gene

Disorders for SNORD30 Gene

Additional Disease Information for SNORD30

No disorders were found for SNORD30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD30 Gene

Publications for SNORD30 Gene

  1. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 58
  2. Genomic analysis of high-risk smoldering multiple myeloma. (PMID: 22331267) López-Corral L … Gutiérrez NC (Haematologica 2012) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3 58

Products for SNORD30 Gene

Sources for SNORD30 Gene

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