Aliases for SNORD29 Gene

Subcategory (RNA class) for SNORD29 Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for SNORD29 Gene

  • Small Nucleolar RNA, C/D Box 29 2 3
  • RNA, U29 Small Nucleolar 2 3
  • SNORD29 2 176
  • RF00070 174
  • RNU29 3
  • U29 3

External Ids for SNORD29 Gene

Previous HGNC Symbols for SNORD29 Gene

  • RNU29

Previous GeneCards Identifiers for SNORD29 Gene

  • GC11M062396
  • GC11M062404
  • GC11M062414
  • GC11M062423
  • GC11M062626
  • GC11M058953
  • GC11M062668

Summaries for SNORD29 Gene

GeneCards Summary for SNORD29 Gene

SNORD29 (Small Nucleolar RNA, C/D Box 29) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD29 include Vaginal Disease.

Rfam classification for SNORD29 Gene

  • Small nucleolar RNA SNORD29

Additional gene information for SNORD29 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD29 Gene

Genomics for SNORD29 Gene

GeneHancer (GH) Regulatory Elements for SNORD29 Gene

Promoters and enhancers for SNORD29 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062851 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 -4.3 -4260 14.3 E2F8 FOXK2 SIN3A ZBTB40 SP1 CTCF MLX SMARCE1 RBPJ POLR2A NXF1 SLC3A2 piR-40154-030 piR-40163-016 piR-52261-046 CSKMT GANAB SNHG1 INTS5 MTA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD29 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD29 gene promoter:
  • AP-1
  • ATF-2
  • c-Jun
  • SREBP-1b
  • SREBP-1c

Genomic Locations for SNORD29 Gene

Genomic Locations for SNORD29 Gene
chr11:62,853,904-62,853,968
(GRCh38/hg38)
Size:
65 bases
Orientation:
Minus strand
chr11:62,619,460-62,623,386
(GRCh37/hg19)
Size:
3,927 bases
Orientation:
Minus strand

Genomic View for SNORD29 Gene

Genes around SNORD29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD29 Gene

Proteins for SNORD29 Gene

Post-translational modifications for SNORD29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD29 Gene

Domains & Families for SNORD29 Gene

Gene Families for SNORD29 Gene

genes like me logo Genes that share domains with SNORD29: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD29 Gene

Function for SNORD29 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD29 Gene

Localization for SNORD29 Gene

Gene Ontology (GO) - Cellular Components for SNORD29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD29: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD29 Gene

Pathways & Interactions for SNORD29 Gene

PathCards logo

SuperPathways for SNORD29 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD29: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD29 Gene

Drugs & Compounds for SNORD29 Gene

No Compound Related Data Available

Transcripts for SNORD29 Gene

mRNA/cDNA for SNORD29 Gene

(1) REFSEQ mRNAs :
(1) RNACentral transcripts :
(1) ENA transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD29 Gene

No ASD Table

Relevant External Links for SNORD29 Gene

GeneLoc Exon Structure for
SNORD29
ECgene alternative splicing isoforms for
SNORD29

Expression for SNORD29 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD29 Gene:

SNORD29
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD29 Gene

Orthologs for SNORD29 Gene

No data available for Orthologs and Evolution for SNORD29 Gene

Paralogs for SNORD29 Gene

No data available for Paralogs for SNORD29 Gene

Variants for SNORD29 Gene

Sequence variations from dbSNP and Humsavar for SNORD29 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000055291 -- 62,855,272(-) T/G upstream_transcript_variant
rs1000661059 -- 62,855,896(-) C/T upstream_transcript_variant
rs1000988950 -- 62,855,843(-) T/A/C upstream_transcript_variant
rs1001419761 -- 62,855,320(-) T/C upstream_transcript_variant
rs1002424048 -- 62,855,938(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD29 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD29 Gene

Disorders for SNORD29 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD29 Gene - From: DISEASES

Disorder Aliases PubMed IDs
vaginal disease
  • vaginal diseases
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD29

genes like me logo Genes that share disorders with SNORD29: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD29 Gene

Publications for SNORD29 Gene

  1. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 56
  2. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3 56
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56
  4. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3 56

Products for SNORD29 Gene

Sources for SNORD29 Gene