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Aliases for SNORD28B Gene

Subcategory (RNA class) for SNORD28B Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD28B Gene

  • Small Nucleolar RNA, C/D Box 28B 2 3 5

External Ids for SNORD28B Gene

ORGUL Members for SNORD28B Gene

Previous GeneCards Identifiers for SNORD28B Gene

  • GC00U936752
  • GC06U903618

Summaries for SNORD28B Gene

GeneCards Summary for SNORD28B Gene

SNORD28B (Small Nucleolar RNA, C/D Box 28B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD28B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD28B Gene

Genomics for SNORD28B Gene

GeneHancer (GH) Regulatory Elements for SNORD28B Gene

Promoters and enhancers for SNORD28B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J156717 Enhancer 1.6 FANTOM5 Ensembl ENCODE 9.6 +341.6 341564 4.6 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ARID1B SNORD28B ENSG00000271265 ENSG00000220347
GH06J156695 Enhancer 1.3 Ensembl ENCODE dbSUPER 10 +318.9 318901 4.4 PKNOX1 SMAD1 RB1 STAT5A BMI1 BATF KLF5 IRF4 SCRT2 ZNF207 ARID1B SNORD28B ENSG00000220347 ENSG00000271265
GH06J156616 Enhancer 1 Ensembl ENCODE 9.7 +240.3 240259 4.2 NFIB MZF1 FEZF1 ZNF2 TCF12 ZNF121 GLIS2 ZNF366 ZSCAN5C CEBPB SNORD28B ENSG00000220347 NMTRV-TAC1-1
GH06J156176 Enhancer 0.8 ENCODE dbSUPER 9.8 -202.5 -202548 0.2 CTCF NANOG MAX BACH1 EBF1 RAD21 CTBP2 POU5F1 EZH2 SNORD28B GC06M156159 LOC105378071 LOC101928923
GH06J156564 Enhancer 0.8 ENCODE 9.7 +185.8 185802 0.2 ATF1 RB1 ARID4B DNMT3B RAD21 ZNF335 GLIS2 ZNF143 ETV6 BCLAF1 ARID1B SNORD28B NMTRV-TAC1-1 ENSG00000220347
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD28B on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD28B Gene

Genomic Locations for SNORD28B Gene
chr6:156,378,750-156,378,824
(GRCh38/hg38)
Size:
75 bases
Orientation:
Plus strand
chr6:156,699,884-156,699,958
(GRCh37/hg19)
Size:
75 bases
Orientation:
Plus strand

Genomic View for SNORD28B Gene

Genes around SNORD28B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD28B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD28B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD28B Gene

Proteins for SNORD28B Gene

Post-translational modifications for SNORD28B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD28B Gene

Domains & Families for SNORD28B Gene

Gene Families for SNORD28B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD28B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD28B Gene

Function for SNORD28B Gene

Phenotypes From GWAS Catalog for SNORD28B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD28B Gene

Localization for SNORD28B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD28B Gene

Pathways & Interactions for SNORD28B Gene

SuperPathways for SNORD28B Gene

No Data Available

Interacting Proteins for SNORD28B Gene

Gene Ontology (GO) - Biological Process for SNORD28B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD28B Gene

Drugs & Compounds for SNORD28B Gene

No Compound Related Data Available

Transcripts for SNORD28B Gene

mRNA/cDNA for SNORD28B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD28B Gene

No ASD Table

Relevant External Links for SNORD28B Gene

GeneLoc Exon Structure for
SNORD28B
ECgene alternative splicing isoforms for
SNORD28B

Expression for SNORD28B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD28B Gene

Orthologs for SNORD28B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD28B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD28 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD28 34
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24453 34
  • 71 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD28 34
  • 67 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD28 34
  • 67 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD28 34
  • 66 (a)
OneToMany
Species where no ortholog for SNORD28B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD28B Gene

ENSEMBL:
Gene Tree for SNORD28B (if available)
TreeFam:
Gene Tree for SNORD28B (if available)

Paralogs for SNORD28B Gene

No data available for Paralogs for SNORD28B Gene

Variants for SNORD28B Gene

Additional Variant Information for SNORD28B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD28B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD28B Gene

Disorders for SNORD28B Gene

Additional Disease Information for SNORD28B

No disorders were found for SNORD28B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD28B Gene

Publications for SNORD28B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 58

Products for SNORD28B Gene

Sources for SNORD28B Gene

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