Aliases for SNORD28B Gene

Subcategory (RNA class) for SNORD28B Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD28B Gene

  • Small Nucleolar RNA, C/D Box 28B 2 3 5
  • SNORD28B 2 5
  • SNORD28L1 170
  • SNODB608 177
  • RF00085 168

External Ids for SNORD28B Gene

Previous GeneCards Identifiers for SNORD28B Gene

  • GC00U936752
  • GC06U903618

Summaries for SNORD28B Gene

GeneCards Summary for SNORD28B Gene

SNORD28B (Small Nucleolar RNA, C/D Box 28B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD28B Gene

  • Small nucleolar RNA SNORD28

Additional gene information for SNORD28B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD28B Gene

Genomics for SNORD28B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD28B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J156379 Enhancer 0.8 Ensembl 600.7 +1.7 1651 0.8 PRDM10 ZNF629 FOXA1 ZIC2 ZNF561 ZBTB44 ZBTB20 JUND ZNF10 ESR1 SNORD28B lnc-NOX3-4 ENSG00000287092 ENSG00000285797 ARID1B NOX3
GH06J156380 Enhancer 0.3 Ensembl 600.7 +0.6 551 0.2 GLIS1 RAD21 SNORD28B lnc-NOX3-4 ENSG00000287092 ENSG00000285797 ARID1B NOX3
GH06J156717 Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas 9.6 +341.6 341564 4.6 CEBPG SP1 HNRNPL GATAD2A TEAD4 REST TFE3 ZNF512 LEF1 IKZF1 ARID1B SNORD28B RF00017-5899 piR-57134-097
GH06J156616 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 9.7 +240.3 240259 4.2 CTCF PRDM10 ZNF629 IKZF1 ZIC2 PATZ1 ZNF501 ZNF600 ZNF341 ZNF561 SNORD28B piR-39279-041 H3P28 ARID1B
GH06J156695 Enhancer 1 ENCODE dbSUPER 10 +318.9 318901 4.4 RNF2 SP1 IKZF1 POLR2A BACH1 JUND LARP7 STAT3 RELA SMAD5 ARID1B SNORD28B lnc-TMEM242-11 RF00017-5899
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD28B on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORD28B Gene

Genomic Locations for SNORD28B Gene
chr6:156,378,750-156,378,824
(GRCh38/hg38)
Size:
75 bases
Orientation:
Plus strand
chr6:156,699,884-156,699,958
(GRCh37/hg19)
Size:
75 bases
Orientation:
Plus strand

Genomic View for SNORD28B Gene

Genes around SNORD28B on UCSC Golden Path with GeneCards custom track
SNORD28B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD28B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD28B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD28B Gene

Proteins for SNORD28B Gene

Post-translational modifications for SNORD28B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD28B Gene

Domains & Families for SNORD28B Gene

Gene Families for SNORD28B Gene

genes like me logo Genes that share domains with SNORD28B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD28B Gene

Function for SNORD28B Gene

Phenotypes From GWAS Catalog for SNORD28B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD28B Gene

Localization for SNORD28B Gene

Gene Ontology (GO) - Cellular Components for SNORD28B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD28B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD28B Gene

Pathways & Interactions for SNORD28B Gene

PathCards logo

SuperPathways for SNORD28B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD28B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD28B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD28B Gene

Drugs & Compounds for SNORD28B Gene

No Compound Related Data Available

Transcripts for SNORD28B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD28B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000067F09E_9606 snoRNA 75 6

HGNC: 52225,

RefSeq: NR_145751,

Ensembl: ENST00000390993 (view in UCSC) ,

Rfam: RF00085,

snoDB: SNODB608,

snOPY: Homo_sapiens300056,

SNORD28B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD28B Gene

No ASD Table

Relevant External Links for SNORD28B Gene

GeneLoc Exon Structure for
SNORD28B

No data available for mRNA/cDNA for SNORD28B Gene

Expression for SNORD28B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD28B Gene

Orthologs for SNORD28B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD28B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD28 31
  • 100 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORD28 31
  • 80 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Gm24453 31
  • 71 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORD28 31
  • 67 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORD28 31
  • 67 (a)
OneToMany
Platypus
(Ornithorhynchus anatinus)
Mammalia SNORD28 31
  • 66 (a)
OneToMany
Species where no ortholog for SNORD28B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD28B Gene

ENSEMBL:
Gene Tree for SNORD28B (if available)
TreeFam:
Gene Tree for SNORD28B (if available)

Paralogs for SNORD28B Gene

No data available for Paralogs for SNORD28B Gene

Variants for SNORD28B Gene

Additional dbSNP identifiers (rs#s) for SNORD28B Gene

Additional Variant Information for SNORD28B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD28B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD28B Gene

Disorders for SNORD28B Gene

Additional Disease Information for SNORD28B

No disorders were found for SNORD28B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD28B Gene

Publications for SNORD28B Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3

No data available for Mastermind for SNORD28B Gene

Products for SNORD28B Gene

Sources for SNORD28B Gene