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Aliases for SNORD28 Gene
Data sources for SNORD28 Gene:
Subcategory (RNA class) for SNORD28 Gene
snoRNA
Aliases for SNORD28 Gene
- Small Nucleolar RNA, C/D Box 28 (HGNC, NCBI Entrez Gene, Ensembl)
- RNA, U28 Small Nucleolar (HGNC, NCBI Entrez Gene)
- SNORD28A (HGNC, NCBI Entrez Gene)
- SNORD28 (Ensembl, snOPY)
- U28 (HGNC, NCBI Entrez Gene)
- RF00085 (Rfam)
- SNODB55 (snoDB)
- RNU28 (NCBI Entrez Gene)
External Ids for SNORD28 Gene
- HGNC: 10150
- NCBI Entrez Gene: 9300
- Ensembl: ENSG00000274544
- OMIM®: 603227
Previous HGNC Symbols for SNORD28 Gene
- RNU28
Previous GeneCards Identifiers for SNORD28 Gene
- GC11M062397
- GC11M062405
- GC11M062415
- GC11M062424
- GC11M062627
- GC11M062632
- GC11M058954
- GC11M062639
- GC11M062647
- GC11M062652
- GC11M062657
- GC11M062669
- GC11M062858
- GC11M062867
- GC11M062974
- GC11M062999
- GC11M063026
- GC11M063091
- GC11M062875
- GC11M062885
- GC11M062893
- GC11M062901
- GC11M062907
- GC11M062915
- GC11M062923
- GC11M062946
- GC11M063453
Summaries for SNORD28 Gene
GeneCards Summary for SNORD28 Gene
SNORD28 (Small Nucleolar RNA, C/D Box 28) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD28 include Microcephalic Osteodysplastic Primordial Dwarfism, Type I.
Rfam classification for SNORD28 Gene
-
Small nucleolar RNA SNORD28
Additional gene information for SNORD28 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD28 Gene
Genomics for SNORD28 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORD28 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD28 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORD28 gene promoter:
-
- AP-1
- ATF-2
- c-Jun
- SREBP-1b
- SREBP-1c
Genomic Locations for SNORD28 Gene
Latest Assembly
- chr11:62,854,621-62,854,695
- (GRCh38/hg38)
- Size:
- 75 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:62,622,093-62,622,167
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 75 bases
- Orientation:
- Minus strand
Genomic View for SNORD28 Gene
Genes around SNORD28 on UCSC Golden Path with GeneCards custom track
SNORD28 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q12.3 by HGNC
- 11q12.3 by Entrez Gene
- 11q12.3 by Ensembl
SNORD28 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD28 Gene
Proteins for SNORD28 Gene
Post-translational modifications for SNORD28 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORD28 Gene
Domains & Families for SNORD28 Gene
Gene Families for SNORD28 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD28 Gene
Function for SNORD28 Gene
Phenotypes From GWAS Catalog for SNORD28 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD28 - Starting at $85 >
- * SNORD28 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD28 Gene
Localization for SNORD28 Gene
| Compartment | Confidence |
|---|---|
| cytoskeleton | 1 |
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD28 Gene
Pathways & Interactions for SNORD28 Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD28 Gene
Transcripts for SNORD28 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD28 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000015A7CF_9606 | snoRNA | 75 | 6 |
RefSeq: NR_002562, Ensembl: ENST00000384706 (view in UCSC) , Rfam: RF00085, snoDB: SNODB55, snOPY: Homo_sapiens300166, |
| URS0001BC498B_9606 | snoRNA | 75 | 1 |
Rfam: RF00085, |
SNORD28 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD28 - Starting at $85 >
- * SNORD28 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
Relevant External Links for SNORD28 Gene
- GeneLoc Exon Structure for
- SNORD28
No data available for mRNA/cDNA for SNORD28 Gene
Expression for SNORD28 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD28
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD28 Gene
Orthologs for SNORD28 Gene
No data available for Orthologs for SNORD28 Gene
Paralogs for SNORD28 Gene
No data available for Paralogs for SNORD28 Gene
Variants for SNORD28 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for SNORD28 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD28
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD28 Gene
Disorders for SNORD28 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| microcephalic osteodysplastic primordial dwarfism, type i |
|
|
Search SNORD28 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SNORD28
No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD28 Gene
Publications for SNORD28 Gene
- A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3
- TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
- The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3
ExternalLinks
Products for SNORD28 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD28
- Origene Custom Protein Services for SNORD28
- Browse OriGene Inhibitory RNA Products For SNORD28
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD28
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD28
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD28
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD28
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD28
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD28
Sources for SNORD28 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB