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SNORD28 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 28

GCID:
GC11M062923
GIFtS:
14
Genes Participants
UDN Logo

Aliases for SNORD28 Gene

Subcategory (RNA class) for SNORD28 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD28 Gene

  • Small Nucleolar RNA, C/D Box 28 2 3 5
  • RNA, U28 Small Nucleolar 2 3
  • SNORD28A 3
  • RNU28 3
  • U28 3

External Ids for SNORD28 Gene

ORGUL Members for SNORD28 Gene

Previous HGNC Symbols for SNORD28 Gene

  • RNU28

Previous GeneCards Identifiers for SNORD28 Gene

  • GC11M062397
  • GC11M062405
  • GC11M062415
  • GC11M062424
  • GC11M062627
  • GC11M062632
  • GC11M058954
  • GC11M062639
  • GC11M062647
  • GC11M062652
  • GC11M062657
  • GC11M062669
  • GC11M062858
  • GC11M062867
  • GC11M062875
  • GC11M062885
  • GC11M062893
  • GC11M062901
  • GC11M062907
  • GC11M062915

Summaries for SNORD28 Gene

GeneCards Summary for SNORD28 Gene

SNORD28 (Small Nucleolar RNA, C/D Box 28) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD28 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD28 Gene

Genomics for SNORD28 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD28 Gene

Promoters and enhancers for SNORD28 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J062852 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 650.7 -1.1 -1142 5.9 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NXF1 SNHG1 SLC3A2 ENSG00000278527 GC11M062919 GC11M062925 GC11M062934 GC11M062938 GC11M062939 GC11M062942
GH11J062878 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.8 -27.1 -27138 5.9 CLOCK DMAP1 YY1 ZNF213 ZNF143 SP3 MEF2D SSRP1 GLIS1 NBN SLC3A2 SNHG1 CSKMT TAF6L GANAB NXF1 TTC9C EML3 STX5 INTS5
GH11J062830 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.3 +22.2 22243 4.6 HDGF PKNOX1 FOXA2 SMAD1 ARID4B NEUROD1 SIN3A DMAP1 YY1 POLR2B LOC105369332 STX5 TEX54 WDR74 SNHG1 UBXN1 NXF1 SNORD28 SLC3A2 CSKMT
GH11J062887 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.8 -35.1 -35064 4 PKNOX1 SMAD1 FOXA2 MLX ARID4B SIN3A DMAP1 TCF12 ZNF121 POLR2B BSCL2 TAF6L SNHG1 TUT1 TTC9C LOC105369332 MTA2 CSKMT SLC3A2 SNORD28
GH11J062712 Promoter/Enhancer 1.4 EPDnew ENCODE dbSUPER 10.3 +140.8 140769 3.5 FOXA2 MAX RAD21 YY1 FOSL1 ZNF316 HNF4G CBFA2T2 ZNF600 NFE2 PIR38618 HNRNPUL2 TTC9C UBXN1 LBHD1 LRRN4CL POLR2G GANAB B3GAT3 UQCC3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD28 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD28 gene promoter:
  • AP-1
  • c-Jun
  • ATF-2
  • SREBP-1c
  • SREBP-1b

Genomic Locations for SNORD28 Gene

Genomic Locations for SNORD28 Gene
chr11:62,854,621-62,854,695
(GRCh38/hg38)
Size:
75 bases
Orientation:
Minus strand
chr11:62,619,460-62,623,386
(GRCh37/hg19)
Size:
3,927 bases
Orientation:
Minus strand

Genomic View for SNORD28 Gene

Genes around SNORD28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD28 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD28 Gene

Proteins for SNORD28 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD28 Gene

Domains & Families for SNORD28 Gene

Gene Families for SNORD28 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD28: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD28 Gene

Function for SNORD28 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD28 Gene

Localization for SNORD28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD28 Gene

Pathways & Interactions for SNORD28 Gene

SuperPathways for SNORD28 Gene

PathCards logo More details on SuperPathways for SNORD28
No Data Available

Interacting Proteins for SNORD28 Gene

Gene Ontology (GO) - Biological Process for SNORD28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD28 Gene

Drugs & Compounds for SNORD28 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD28 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD28 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD28 Gene

No ASD Table

Relevant External Links for SNORD28 Gene

GeneLoc Exon Structure for
SNORD28
ECgene alternative splicing isoforms for
SNORD28

Expression for SNORD28 Gene

Products:

  1. Primer
  2. Gene Expression Assay

NURSA nuclear receptor signaling pathways regulating expression of SNORD28 Gene:

SNORD28
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD28 Gene

Orthologs for SNORD28 Gene

Evolution for SNORD28 Gene

ENSEMBL:
Gene Tree for SNORD28 (if available)
TreeFam:
Gene Tree for SNORD28 (if available)

No data available for Orthologs for SNORD28 Gene

Paralogs for SNORD28 Gene

No data available for Paralogs for SNORD28 Gene

Variants for SNORD28 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD28 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000055291 -- 62,855,272(-) T/G upstream_transcript_variant
rs1000661059 -- 62,855,896(-) C/T upstream_transcript_variant
rs1000988950 -- 62,855,843(-) T/C upstream_transcript_variant
rs1001419761 -- 62,855,320(-) T/C upstream_transcript_variant
rs1002424048 -- 62,855,938(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD28 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD28 Gene

Disorders for SNORD28 Gene

Additional Disease Information for SNORD28

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD28 Gene

Publications for SNORD28 Gene

  1. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3 58

Products for SNORD28 Gene

Sources for SNORD28 Gene

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