Aliases for SNORD28 Gene

Subcategory (RNA class) for SNORD28 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for SNORD28 Gene

  • Small Nucleolar RNA, C/D Box 28 2 3 5
  • RNA, U28 Small Nucleolar 2 3
  • SNORD28 2 176
  • SNORD28A 3
  • RF00085 174
  • RNU28 3
  • U28 3

External Ids for SNORD28 Gene

Previous HGNC Symbols for SNORD28 Gene

  • RNU28

Previous GeneCards Identifiers for SNORD28 Gene

  • GC11M062397
  • GC11M062405
  • GC11M062415
  • GC11M062424
  • GC11M062627
  • GC11M062632
  • GC11M058954
  • GC11M062639
  • GC11M062647
  • GC11M062652
  • GC11M062657
  • GC11M062669
  • GC11M062858
  • GC11M062867
  • GC11M062974
  • GC11M062999
  • GC11M062875
  • GC11M062885
  • GC11M062893
  • GC11M062901
  • GC11M062907
  • GC11M062915
  • GC11M062923
  • GC11M062946

Summaries for SNORD28 Gene

GeneCards Summary for SNORD28 Gene

SNORD28 (Small Nucleolar RNA, C/D Box 28) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD28 Gene

  • Small nucleolar RNA SNORD28

Additional gene information for SNORD28 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD28 Gene

Genomics for SNORD28 Gene

GeneHancer (GH) Regulatory Elements for SNORD28 Gene

Promoters and enhancers for SNORD28 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062878 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 -27.1 -27149 5.9 SIN3A ZBTB40 SP1 CTCF SREBF1 ZBTB6 SMARCE1 RBPJ POLR2A TCF7L2 SLC3A2 HSALNG0084674 lnc-CHRM1-1 SNHG1 NXF1 GANAB EML3 CSKMT MTA2 TMEM179B
GH11J062830 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.3 +22.2 22243 4.6 FOXK2 SP1 ZBTB40 RBPJ SMARCE1 POLR2A CEBPZ USF2 ATF1 FOS STX5 ENSG00000256690 LOC105369332 TEX54 SNHG1 NXF1 WDR74 CSKMT TTC9C UBXN1
GH11J062712 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 10.3 +140.6 140610 3.8 FOXA1 SP1 CBFA2T2 MLLT1 PRDM1 RXRA FOXA2 ZNF316 NR2C1 JUND piR-45619 HNRNPUL2 TTC9C UBXN1 LBHD1 LRRN4CL POLR2G GANAB B3GAT3 UQCC3
GH11J062887 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.8 -35.1 -35064 4 SIN3A MLX POLR2A NR2F6 ZNF362 HLF L3MBTL2 ZNF121 TEAD4 TFE3 NXF1 BSCL2 EML3 GANAB TAF6L TMEM179B STX5 SNHG1 MTA2 TUT1
GH11J062694 Enhancer 0.9 Ensembl ENCODE 10.3 +159.8 159830 1.1 CTCF CC2D1A RAD21 EGR1 ARID2 REST BACH1 TRIM22 ZNF143 ZNF561 BSCL2 TTC9C LBHD1 SNORA57 CSKMT ENSG00000255432 INTS5 GANAB UQCC3 EML3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD28 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD28 gene promoter:
  • AP-1
  • ATF-2
  • c-Jun
  • SREBP-1b
  • SREBP-1c

Genomic Locations for SNORD28 Gene

Genomic Locations for SNORD28 Gene
chr11:62,854,621-62,854,695
(GRCh38/hg38)
Size:
75 bases
Orientation:
Minus strand
chr11:62,619,460-62,623,386
(GRCh37/hg19)
Size:
3,927 bases
Orientation:
Minus strand

Genomic View for SNORD28 Gene

Genes around SNORD28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD28 Gene

Proteins for SNORD28 Gene

Post-translational modifications for SNORD28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD28 Gene

Domains & Families for SNORD28 Gene

Gene Families for SNORD28 Gene

genes like me logo Genes that share domains with SNORD28: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD28 Gene

Function for SNORD28 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD28 Gene

Localization for SNORD28 Gene

Gene Ontology (GO) - Cellular Components for SNORD28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD28: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD28 Gene

Pathways & Interactions for SNORD28 Gene

PathCards logo

SuperPathways for SNORD28 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD28 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD28: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD28 Gene

Drugs & Compounds for SNORD28 Gene

No Compound Related Data Available

Transcripts for SNORD28 Gene

mRNA/cDNA for SNORD28 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) ENA transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD28 Gene

No ASD Table

Relevant External Links for SNORD28 Gene

GeneLoc Exon Structure for
SNORD28
ECgene alternative splicing isoforms for
SNORD28

Expression for SNORD28 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD28 Gene:

SNORD28
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD28 Gene

Orthologs for SNORD28 Gene

Evolution for SNORD28 Gene

ENSEMBL:
Gene Tree for SNORD28 (if available)
TreeFam:
Gene Tree for SNORD28 (if available)

No data available for Orthologs for SNORD28 Gene

Paralogs for SNORD28 Gene

No data available for Paralogs for SNORD28 Gene

Variants for SNORD28 Gene

Sequence variations from dbSNP and Humsavar for SNORD28 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000055291 -- 62,855,272(-) T/G upstream_transcript_variant
rs1000661059 -- 62,855,896(-) C/T upstream_transcript_variant
rs1000988950 -- 62,855,843(-) T/A/C upstream_transcript_variant
rs1001419761 -- 62,855,320(-) T/C upstream_transcript_variant
rs1002424048 -- 62,855,938(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD28 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD28 Gene

Disorders for SNORD28 Gene

Additional Disease Information for SNORD28

No disorders were found for SNORD28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD28 Gene

Publications for SNORD28 Gene

  1. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 56
  2. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3 56
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56
  4. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3 56

Products for SNORD28 Gene

Sources for SNORD28 Gene