Aliases for SNORD27 Gene

Subcategory (RNA class) for SNORD27 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for SNORD27 Gene

  • Small Nucleolar RNA, C/D Box 27 2 3 5
  • RNA, U27 Small Nucleolar 2 3
  • SNORD27 2 176
  • RF00086 174
  • RNU27 3
  • U27 3

External Ids for SNORD27 Gene

Previous HGNC Symbols for SNORD27 Gene

  • RNU27

Previous GeneCards Identifiers for SNORD27 Gene

  • GC11M062398
  • GC11M062406
  • GC11M062416
  • GC11M062425
  • GC11M062629
  • GC11M062634
  • GC11M058955
  • GC11M062640
  • GC11M062648
  • GC11M062653
  • GC11M062659
  • GC11M062670
  • GC11M062859
  • GC11M062868
  • GC11M062975
  • GC11M063000
  • GC11M062876
  • GC11M062886
  • GC11M062894
  • GC11M062902
  • GC11M062910
  • GC11M062916
  • GC11M062924
  • GC11M062947

Summaries for SNORD27 Gene

GeneCards Summary for SNORD27 Gene

SNORD27 (Small Nucleolar RNA, C/D Box 27) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD27 Gene

  • Small nucleolar RNA SNORD27

Additional gene information for SNORD27 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD27 Gene

Genomics for SNORD27 Gene

GeneHancer (GH) Regulatory Elements for SNORD27 Gene

Promoters and enhancers for SNORD27 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062851 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 -3.1 -3145 14.3 E2F8 FOXK2 SIN3A ZBTB40 SP1 CTCF MLX SMARCE1 RBPJ POLR2A NXF1 SLC3A2 piR-40154-030 piR-40163-016 piR-52261-046 CSKMT GANAB SNHG1 INTS5 MTA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD27 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD27 gene promoter:
  • AP-1
  • ATF-2
  • c-Jun
  • SREBP-1b
  • SREBP-1c

Genomic Locations for SNORD27 Gene

Genomic Locations for SNORD27 Gene
chr11:62,855,012-62,855,083
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr11:62,619,460-62,623,386
(GRCh37/hg19)
Size:
3,927 bases
Orientation:
Minus strand

Genomic View for SNORD27 Gene

Genes around SNORD27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD27 Gene

Proteins for SNORD27 Gene

Post-translational modifications for SNORD27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD27 Gene

Domains & Families for SNORD27 Gene

Gene Families for SNORD27 Gene

genes like me logo Genes that share domains with SNORD27: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD27 Gene

Function for SNORD27 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD27 Gene

Localization for SNORD27 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD27 gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD27: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD27 Gene

Pathways & Interactions for SNORD27 Gene

PathCards logo

SuperPathways for SNORD27 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD27: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD27 Gene

Drugs & Compounds for SNORD27 Gene

No Compound Related Data Available

Transcripts for SNORD27 Gene

mRNA/cDNA for SNORD27 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) ENA transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD27 Gene

No ASD Table

Relevant External Links for SNORD27 Gene

GeneLoc Exon Structure for
SNORD27
ECgene alternative splicing isoforms for
SNORD27

Expression for SNORD27 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD27 Gene:

SNORD27
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD27 Gene

Orthologs for SNORD27 Gene

Evolution for SNORD27 Gene

ENSEMBL:
Gene Tree for SNORD27 (if available)
TreeFam:
Gene Tree for SNORD27 (if available)

No data available for Orthologs for SNORD27 Gene

Paralogs for SNORD27 Gene

No data available for Paralogs for SNORD27 Gene

Variants for SNORD27 Gene

Sequence variations from dbSNP and Humsavar for SNORD27 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000055291 -- 62,855,272(-) T/G upstream_transcript_variant
rs1000661059 -- 62,855,896(-) C/T upstream_transcript_variant
rs1000988950 -- 62,855,843(-) T/A/C upstream_transcript_variant
rs1001419761 -- 62,855,320(-) T/C upstream_transcript_variant
rs1002424048 -- 62,855,938(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD27 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD27 Gene

Disorders for SNORD27 Gene

Additional Disease Information for SNORD27

No disorders were found for SNORD27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD27 Gene

Publications for SNORD27 Gene

  1. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 56
  2. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3 56
  3. Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing. (PMID: 26957605) Falaleeva M … Stamm S (Proceedings of the National Academy of Sciences of the United States of America 2016) 3 56
  4. Genomic analysis of high-risk smoldering multiple myeloma. (PMID: 22331267) López-Corral L … Gutiérrez NC (Haematologica 2012) 3 56
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56

Products for SNORD27 Gene

Sources for SNORD27 Gene