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Aliases for SNORD27 Gene
Subcategory (RNA class) for SNORD27 Gene
snoRNA
Quality Score for this RNA gene is
15
Aliases for SNORD27 Gene
External Ids for SNORD27 Gene
- HGNC: 10149
- Entrez Gene: 9301
- Ensembl: ENSG00000275996
- OMIM: 603226
Previous HGNC Symbols for SNORD27 Gene
- RNU27
Previous GeneCards Identifiers for SNORD27 Gene
- GC11M062398
- GC11M062406
- GC11M062416
- GC11M062425
- GC11M062629
- GC11M062634
- GC11M058955
- GC11M062640
- GC11M062648
- GC11M062653
- GC11M062659
- GC11M062670
- GC11M062859
- GC11M062868
- GC11M062975
- GC11M063000
- GC11M062876
- GC11M062886
- GC11M062894
- GC11M062902
- GC11M062910
- GC11M062916
- GC11M062924
- GC11M062947
Summaries for SNORD27 Gene
GeneCards Summary for SNORD27 Gene
SNORD27 (Small Nucleolar RNA, C/D Box 27) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORD27 Gene
-
Small nucleolar RNA SNORD27
Additional gene information for SNORD27 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD27 Gene
Genomics for SNORD27 Gene
GeneHancer (GH) Regulatory Elements for SNORD27 Gene
Promoters and enhancers for SNORD27 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J062851 | Promoter/Enhancer | 2.8 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.6 | -3.1 | -3145 | 14.3 | E2F8 FOXK2 SIN3A ZBTB40 SP1 CTCF MLX SMARCE1 RBPJ POLR2A | NXF1 SLC3A2 piR-40154-030 piR-40163-016 piR-52261-046 CSKMT GANAB SNHG1 INTS5 MTA2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD27 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the SNORD27 gene promoter:
-
- AP-1
- ATF-2
- c-Jun
- SREBP-1b
- SREBP-1c
Genomic Locations for SNORD27 Gene
Genomic Locations for SNORD27 Gene
- chr11:62,855,012-62,855,083
- (GRCh38/hg38)
- Size:
- 72 bases
- Orientation:
- Minus strand
- chr11:62,619,460-62,623,386
- (GRCh37/hg19)
- Size:
- 3,927 bases
- Orientation:
- Minus strand
Genomic View for SNORD27 Gene
Genes around SNORD27 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q12.3 by HGNC
- 11q12.3 by Entrez Gene
- 11q12.3 by Ensembl
SNORD27 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD27 Gene
Proteins for SNORD27 Gene
Post-translational modifications for SNORD27 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD27
- Origene Custom Protein Services for SNORD27
No data available for DME Specific Peptides for SNORD27 Gene
Domains & Families for SNORD27 Gene
Gene Families for SNORD27 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD27 Gene
Function for SNORD27 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for SNORD27
- Applied Biological Materials (abm): CRISPR Clones for SNORD27 - Select products 50% OFF >
- * SNORD27 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * SNORD27 CRISPR applications: KO, Activation, Repression, and more - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD27 Gene
Localization for SNORD27 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD27 Gene
Pathways & Interactions for SNORD27 Gene
No data available for Pathways by source and SIGNOR curated interactions for SNORD27 Gene
Transcripts for SNORD27 Gene
mRNA/cDNA for SNORD27 Gene
- (1) REFSEQ mRNAs :
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000363981 72 bps (ENST00000363981.1)
- (1) RNACentral transcripts :
- (1) ENA transcripts :
- (1) Rfam transcripts :
- (1) snOPY transcripts :
CRISPR Products
- Browse CRISPR knockouts for SNORD27
- Applied Biological Materials (abm): CRISPR Clones for SNORD27 - Select products 50% OFF >
- * SNORD27 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * SNORD27 CRISPR applications: KO, Activation, Repression, and more - Browse All
miRNA Products
Inhibitory RNA Products
Expression for SNORD27 Gene
NURSA nuclear receptor signaling pathways regulating expression of SNORD27 Gene:
SNORD27
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD27 Gene
Orthologs for SNORD27 Gene
No data available for Orthologs for SNORD27 Gene
Paralogs for SNORD27 Gene
No data available for Paralogs for SNORD27 Gene
Variants for SNORD27 Gene
| SNP ID | Clin | Chr 11 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000055291 | -- | 62,855,272(-) | T/G | upstream_transcript_variant | |
| rs1000661059 | -- | 62,855,896(-) | C/T | upstream_transcript_variant | |
| rs1000988950 | -- | 62,855,843(-) | T/A/C | upstream_transcript_variant | |
| rs1001419761 | -- | 62,855,320(-) | T/C | upstream_transcript_variant | |
| rs1002424048 | -- | 62,855,938(-) | A/C | upstream_transcript_variant |
Additional Variant Information for SNORD27 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD27
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD27 Gene
Disorders for SNORD27 Gene
Additional Disease Information for SNORD27
No disorders were found for SNORD27 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD27 Gene
Publications for SNORD27 Gene
- A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 56
- TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3 56
- Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing. (PMID: 26957605) Falaleeva M … Stamm S (Proceedings of the National Academy of Sciences of the United States of America 2016) 3 56
- Genomic analysis of high-risk smoldering multiple myeloma. (PMID: 22331267) López-Corral L … Gutiérrez NC (Haematologica 2012) 3 56
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56
ExternalLinks
Products for SNORD27 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD27
- Origene Custom Protein Services for SNORD27
- Browse OriGene Inhibitory RNA Products For SNORD27
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD27
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD27
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Addgene plasmids for SNORD27
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD27
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD27
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD27
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD27
Sources for SNORD27 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource