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Aliases for SNORD27 Gene
Data sources for SNORD27 Gene:
Subcategory (RNA class) for SNORD27 Gene
snoRNA
Aliases for SNORD27 Gene
- Small Nucleolar RNA, C/D Box 27 (HGNC, NCBI Entrez Gene, Ensembl)
- RNA, U27 Small Nucleolar (HGNC, NCBI Entrez Gene)
- SNORD27 (Ensembl, snOPY)
- U27 (HGNC, NCBI Entrez Gene)
- SNODB166 (snoDB)
- RF00086 (Rfam)
- RNU27 (NCBI Entrez Gene)
External Ids for SNORD27 Gene
- HGNC: 10149
- NCBI Entrez Gene: 9301
- Ensembl: ENSG00000275996
- OMIM®: 603226
Previous HGNC Symbols for SNORD27 Gene
- RNU27
Previous GeneCards Identifiers for SNORD27 Gene
- GC11M062398
- GC11M062406
- GC11M062416
- GC11M062425
- GC11M062629
- GC11M062634
- GC11M058955
- GC11M062640
- GC11M062648
- GC11M062653
- GC11M062659
- GC11M062670
- GC11M062859
- GC11M062868
- GC11M062975
- GC11M063000
- GC11M063027
- GC11M063092
- GC11M062876
- GC11M062886
- GC11M062894
- GC11M062902
- GC11M062910
- GC11M062916
- GC11M062924
- GC11M062947
- GC11M063457
Summaries for SNORD27 Gene
GeneCards Summary for SNORD27 Gene
SNORD27 (Small Nucleolar RNA, C/D Box 27) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD27 include Smoldering Myeloma.
Rfam classification for SNORD27 Gene
-
Small nucleolar RNA SNORD27
Additional gene information for SNORD27 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD27 Gene
Genomics for SNORD27 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORD27 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J062851 | Promoter/Enhancer | 2.7 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.7 | -2.7 | -2677 | 13.4 | BCL11A SP1 MXD4 FEZF1 CEBPA MNT DEK IKZF1 SMAD5 ETS1 | SNHG1 NXF1 SLC3A2 piR-40154-030 piR-40163-016 piR-52261-046 CSKMT MTA2 LOC105369332 GANAB |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD27 on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORD27 gene promoter:
-
- AP-1
- ATF-2
- c-Jun
- SREBP-1b
- SREBP-1c
Genomic Locations for SNORD27 Gene
Latest Assembly
- chr11:62,855,012-62,855,083
- (GRCh38/hg38)
- Size:
- 72 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:62,622,484-62,622,555
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 72 bases
- Orientation:
- Minus strand
Genomic View for SNORD27 Gene
Genes around SNORD27 on UCSC Golden Path with GeneCards custom track
SNORD27 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q12.3 by HGNC
- 11q12.3 by Entrez Gene
- 11q12.3 by Ensembl
SNORD27 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD27 Gene
Proteins for SNORD27 Gene
Post-translational modifications for SNORD27 Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORD27 Gene
Domains & Families for SNORD27 Gene
Gene Families for SNORD27 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD27 Gene
Function for SNORD27 Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD27 - Starting at $85 >
- * SNORD27 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD27 Gene
Localization for SNORD27 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 2 |
| plasma membrane | 1 |
| extracellular | 1 |
| cytoskeleton | 1 |
| mitochondrion | 1 |
| cytosol | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD27 Gene
Pathways & Interactions for SNORD27 Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD27 Gene
Transcripts for SNORD27 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD27 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000041615F_9606 | snoRNA | 72 | 6 |
RefSeq: NR_002563, Ensembl: ENST00000363981 (view in UCSC) , Rfam: RF00086, snoDB: SNODB166, snOPY: Homo_sapiens300167, |
| URS0001BBFB93_9606 | snoRNA | 72 | 1 |
Rfam: RF00086, |
SNORD27 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD27 - Starting at $85 >
- * SNORD27 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Relevant External Links for SNORD27 Gene
- GeneLoc Exon Structure for
- SNORD27
No data available for mRNA/cDNA for SNORD27 Gene
Expression for SNORD27 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD27
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD27 Gene
Orthologs for SNORD27 Gene
No data available for Orthologs for SNORD27 Gene
Paralogs for SNORD27 Gene
No data available for Paralogs for SNORD27 Gene
Variants for SNORD27 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for SNORD27 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD27
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD27 Gene
Disorders for SNORD27 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| smoldering myeloma |
|
|
Search SNORD27 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for SNORD27
No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD27 Gene
Publications for SNORD27 Gene
- A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3
- TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3
- Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing. (PMID: 26957605) Falaleeva M … Stamm S (Proceedings of the National Academy of Sciences of the United States of America 2016) 3
- Genomic analysis of high-risk smoldering multiple myeloma. (PMID: 22331267) López-Corral L … Gutiérrez NC (Haematologica 2012) 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
ExternalLinks
Products for SNORD27 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD27
- Origene Custom Protein Services for SNORD27
- Browse OriGene Inhibitory RNA Products For SNORD27
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD27
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD27
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Addgene plasmids for SNORD27
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD27
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD27
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD27
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD27
Sources for SNORD27 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB