Aliases for SNORD27 Gene
Subcategory (RNA class) for SNORD27 Gene
snoRNA
Quality Score for this RNA gene is
13
Aliases for SNORD27 Gene
External Ids for SNORD27 Gene
- HGNC: 10149
- Entrez Gene: 9301
- Ensembl: ENSG00000275996
- OMIM: 603226
Previous HGNC Symbols for SNORD27 Gene
- RNU27
Previous GeneCards Identifiers for SNORD27 Gene
- GC11M062398
- GC11M062406
- GC11M062416
- GC11M062425
- GC11M062629
- GC11M062634
- GC11M058955
- GC11M062640
- GC11M062648
- GC11M062653
- GC11M062659
- GC11M062670
- GC11M062859
- GC11M062868
- GC11M062876
- GC11M062886
- GC11M062894
- GC11M062902
- GC11M062910
- GC11M062916
Summaries for SNORD27 Gene
GeneCards Summary for SNORD27 Gene
SNORD27 (Small Nucleolar RNA, C/D Box 27) is an RNA Gene, and is affiliated with the snoRNA class.
Additional gene information for SNORD27 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD27 Gene
Genomics for SNORD27 Gene
GeneHancer (GH) Regulatory Elements for SNORD27 Gene
Promoters and enhancers for SNORD27 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J062852 | Promoter/Enhancer | 2.6 | EPDnew FANTOM5 Ensembl ENCODE dbSUPER | 650.7 | -0.8 | -754 | 5.9 | MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 | NXF1 SNHG1 SLC3A2 ENSG00000278527 GC11M062919 GC11M062925 GC11M062934 GC11M062938 GC11M062939 GC11M062942 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around SNORD27 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the SNORD27 gene promoter:
-
- AP-1
- c-Jun
- ATF-2
- SREBP-1c
- SREBP-1b
Regulatory Element Products
Genomic Locations for SNORD27 Gene
Genomic Locations for SNORD27 Gene
- chr11:62,855,012-62,855,083
- (GRCh38/hg38)
- Size:
- 72 bases
- Orientation:
- Minus strand
- chr11:62,619,460-62,623,386
- (GRCh37/hg19)
- Size:
- 3,927 bases
- Orientation:
- Minus strand
Genomic View for SNORD27 Gene
Genes around SNORD27 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q12.3 by Entrez Gene
- 11q12.3 by HGNC
- 11q12.3 by Ensembl
SNORD27 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD27 Gene
Proteins for SNORD27 Gene
Post-translational modifications for SNORD27 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for SNORD27
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD27
- Origene Custom Protein Services for SNORD27
- Search GeneTex for Proteins for SNORD27
No data available for DME Specific Peptides for SNORD27 Gene
Domains & Families for SNORD27 Gene
Gene Families for SNORD27 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD27 Gene
Function for SNORD27 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for SNORD27
-
CRISPR Products
- Browse CRISPR knockouts for SNORD27
- Applied Biological Materials CRISPR for SNORD27
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
Inhibitory RNA Products
Clone Products
- GenScript: Custom all cDNA clones Services for SNORD27
- VectorBuilder custom plasmid, inducible vectors for SNORD27
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNORD27
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for SNORD27
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD27 Gene
Localization for SNORD27 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD27 Gene
Transcripts for SNORD27 Gene
mRNA/cDNA for SNORD27 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000363981 72 bps (uc001nvz.2)
- (2) RNA Central transcripts :
CRISPR Products
- Browse CRISPR knockouts for SNORD27
- Applied Biological Materials CRISPR for SNORD27
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
Inhibitory RNA Products
Clone Products
- GenScript: Custom all cDNA clones Services for SNORD27
- VectorBuilder custom plasmid, inducible vectors for SNORD27
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNORD27
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for SNORD27
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for SNORD27 Gene
NURSA nuclear receptor signaling pathways regulating expression of SNORD27 Gene:
SNORD27
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD27 Gene
Orthologs for SNORD27 Gene
No data available for Orthologs for SNORD27 Gene
Paralogs for SNORD27 Gene
No data available for Paralogs for SNORD27 Gene
Variants for SNORD27 Gene
| SNP ID | Clin | Chr 11 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000055291 | -- | 62,855,272(-) | T/G | upstream_transcript_variant | |
| rs1000661059 | -- | 62,855,896(-) | C/T | upstream_transcript_variant | |
| rs1000988950 | -- | 62,855,843(-) | T/C | upstream_transcript_variant | |
| rs1001419761 | -- | 62,855,320(-) | T/C | upstream_transcript_variant | |
| rs1002424048 | -- | 62,855,938(-) | A/C | upstream_transcript_variant |
Additional Variant Information for SNORD27 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD27
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD27 Gene
Disorders for SNORD27 Gene
Additional Disease Information for SNORD27
No disorders were found for SNORD27 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD27 Gene
Publications for SNORD27 Gene
- A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 58
- Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing. (PMID: 26957605) Falaleeva M … Stamm S (Proceedings of the National Academy of Sciences of the United States of America 2016) 3 58
- Genomic analysis of high-risk smoldering multiple myeloma. (PMID: 22331267) López-Corral L … Gutiérrez NC (Haematologica 2012) 3 58
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
- The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3 58
Products for SNORD27 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Human Proteins and Enzymes
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD27
- Origene Custom Protein Services for SNORD27
- Browse OriGene Inhibitory RNA Products For SNORD27
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD27
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD27
- GenScript: Custom all cDNA clones Services for SNORD27
- GenScript Custom Purified and Recombinant Proteins Services for SNORD27
- GenScript Custom Assay Services for SNORD27
- GenScript Custom overexpressing Cell Line Services for SNORD27
- Browse GenScript CRISPR for SNORD27
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- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for SNORD27
- VectorBuilder custom plasmid, inducible vectors for SNORD27
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNORD27
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for SNORD27
- Search GeneTex for Proteins for SNORD27
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD27
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD27
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD27
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD27
Sources for SNORD27 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt