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SNORD26 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 26

GCID:
GC11M062930
GIFtS:
14
Genes Participants
UDN Logo

Aliases for SNORD26 Gene

Subcategory (RNA class) for SNORD26 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD26 Gene

  • Small Nucleolar RNA, C/D Box 26 2 3 5
  • RNA, U26 Small Nucleolar 2 3
  • RNU26 3
  • U26 3

External Ids for SNORD26 Gene

ORGUL Members for SNORD26 Gene

Previous HGNC Symbols for SNORD26 Gene

  • RNU26

Previous GeneCards Identifiers for SNORD26 Gene

  • GC11M062399
  • GC11M062407
  • GC11M062417
  • GC11M062426
  • GC11M062630
  • GC11M062635
  • GC11M058956
  • GC11M062641
  • GC11M062649
  • GC11M062654
  • GC11M062660
  • GC11M062671
  • GC11M062860
  • GC11M062870
  • GC11M062879
  • GC11M062890
  • GC11M062899
  • GC11M062908
  • GC11M062917
  • GC11M062926

Summaries for SNORD26 Gene

GeneCards Summary for SNORD26 Gene

SNORD26 (Small Nucleolar RNA, C/D Box 26) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD26 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD26 Gene

Genomics for SNORD26 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD26 Gene

Promoters and enhancers for SNORD26 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J062852 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 650.7 -0.5 -471 5.9 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NXF1 SNHG1 SLC3A2 ENSG00000278527 GC11M062919 GC11M062925 GC11M062934 GC11M062938 GC11M062939 GC11M062942
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD26 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD26 gene promoter:
  • AP-1
  • c-Jun
  • ATF-2
  • SREBP-1c
  • SREBP-1b

Genomic Locations for SNORD26 Gene

Genomic Locations for SNORD26 Gene
chr11:62,855,292-62,855,366
(GRCh38/hg38)
Size:
75 bases
Orientation:
Minus strand
chr11:62,619,460-62,623,386
(GRCh37/hg19)
Size:
3,927 bases
Orientation:
Minus strand

Genomic View for SNORD26 Gene

Genes around SNORD26 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD26 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD26 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD26 Gene

Proteins for SNORD26 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD26 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD26 Gene

Domains & Families for SNORD26 Gene

Gene Families for SNORD26 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD26: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD26 Gene

Function for SNORD26 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD26 Gene

Localization for SNORD26 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD26 Gene

Pathways & Interactions for SNORD26 Gene

SuperPathways for SNORD26 Gene

PathCards logo More details on SuperPathways for SNORD26
No Data Available

Interacting Proteins for SNORD26 Gene

Gene Ontology (GO) - Biological Process for SNORD26 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD26 Gene

Drugs & Compounds for SNORD26 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD26 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD26 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD26 Gene

No ASD Table

Relevant External Links for SNORD26 Gene

GeneLoc Exon Structure for
SNORD26
ECgene alternative splicing isoforms for
SNORD26

Expression for SNORD26 Gene

Products:

  1. Primer
  2. Gene Expression Assay

NURSA nuclear receptor signaling pathways regulating expression of SNORD26 Gene:

SNORD26
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD26 Gene

Orthologs for SNORD26 Gene

Evolution for SNORD26 Gene

ENSEMBL:
Gene Tree for SNORD26 (if available)
TreeFam:
Gene Tree for SNORD26 (if available)

No data available for Orthologs for SNORD26 Gene

Paralogs for SNORD26 Gene

No data available for Paralogs for SNORD26 Gene

Variants for SNORD26 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD26 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000055291 -- 62,855,272(-) T/G downstream_transcript_variant
rs1000661059 -- 62,855,896(-) C/T upstream_transcript_variant
rs1000988950 -- 62,855,843(-) T/C upstream_transcript_variant
rs1001419761 -- 62,855,320(-) T/C non_coding_transcript_variant
rs1002424048 -- 62,855,938(-) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD26 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD26 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD26

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD26 Gene

Disorders for SNORD26 Gene

Additional Disease Information for SNORD26

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD26 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD26 Gene

Publications for SNORD26 Gene

  1. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 3 58

Products for SNORD26 Gene

Sources for SNORD26 Gene

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