Aliases for SNORD25 Gene

Data sources for SNORD25 Gene:

Subcategory (RNA class) for SNORD25 Gene

snoRNA

Aliases for SNORD25 Gene

External Ids for SNORD25 Gene

Previous HGNC Symbols for SNORD25 Gene

  • RNU25

Previous GeneCards Identifiers for SNORD25 Gene

  • GC11M062400
  • GC11M062408
  • GC11M062418
  • GC11M062427
  • GC11M062631
  • GC11M062636
  • GC11M058957
  • GC11M062645
  • GC11M062650
  • GC11M062655
  • GC11M062662
  • GC11M062672
  • GC11M062861
  • GC11M062871
  • GC11M062972
  • GC11M062998
  • GC11M063024
  • GC11M063088
  • GC11M062880
  • GC11M062891
  • GC11M062900
  • GC11M062909
  • GC11M062918
  • GC11M062928
  • GC11M062940
  • GC11M062958
  • GC11M063451

Summaries for SNORD25 Gene

GeneCards Summary for SNORD25 Gene

SNORD25 (Small Nucleolar RNA, C/D Box 25) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD25 Gene

  • Small nucleolar RNA SNORD25

Additional gene information for SNORD25 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD25 Gene

Genomics for SNORD25 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD25 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062851 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.1 -2128 13.4 BCL11A SP1 MXD4 FEZF1 CEBPA MNT DEK IKZF1 SMAD5 ETS1 SNHG1 NXF1 SLC3A2 piR-40154-030 piR-40163-016 piR-52261-046 CSKMT MTA2 LOC105369332 GANAB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD25 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD25 gene promoter:
  • AP-1
  • ATF-2
  • c-Jun
  • SREBP-1b
  • SREBP-1c

Genomic Locations for SNORD25 Gene

Latest Assembly
chr11:62,855,564-62,855,632
(GRCh38/hg38)
Size:
69 bases
Orientation:
Minus strand

Previous Assembly
chr11:62,623,037-62,623,103
(GRCh37/hg19 by Entrez Gene)
Size:
67 bases
Orientation:
Minus strand

Genomic View for SNORD25 Gene

Genes around SNORD25 on UCSC Golden Path with GeneCards custom track
SNORD25 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD25 Gene

Proteins for SNORD25 Gene

Post-translational modifications for SNORD25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD25 Gene

Domains & Families for SNORD25 Gene

Gene Families for SNORD25 Gene

genes like me logo Genes that share domains with SNORD25: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD25 Gene

Function for SNORD25 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD25 Gene

Localization for SNORD25 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD25 gene
Compartment Confidence
extracellular 1
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD25 Gene

Pathways & Interactions for SNORD25 Gene

PathCards logo

SuperPathways for SNORD25 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD25 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD25 Gene

Drugs & Compounds for SNORD25 Gene

No Compound Related Data Available

Transcripts for SNORD25 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD25 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000454FD5_9606 snoRNA 67 4

RefSeq: NR_002565,

snoDB: SNODB175,

snOPY: Homo_sapiens300169,

ENA: AF081279.1:346..412:misc_RNA, U40580.1:750..816:ncRNA,

URS00006B61AB_9606 snoRNA 69 3

Ensembl: ENST00000365607 (view in UCSC) ,

Rfam: RF00054,

snoDB: SNODB1953,

URS0001BC01A9_9606 snoRNA 68 1

Rfam: RF00054,

URS0001BC8BCA_9606 snoRNA 68 1

Rfam: RF00054,

SNORD25 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD25 Gene

No ASD Table

Relevant External Links for SNORD25 Gene

GeneLoc Exon Structure for
SNORD25

No data available for mRNA/cDNA for SNORD25 Gene

Expression for SNORD25 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD25

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD25 Gene

Orthologs for SNORD25 Gene

Evolution for SNORD25 Gene

ENSEMBL:
Gene Tree for SNORD25 (if available)
TreeFam:
Gene Tree for SNORD25 (if available)

No data available for Orthologs for SNORD25 Gene

Paralogs for SNORD25 Gene

No data available for Paralogs for SNORD25 Gene

Variants for SNORD25 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD25 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORD25 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD25

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD25 Gene

Disorders for SNORD25 Gene

Additional Disease Information for SNORD25

No disorders were found for SNORD25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD25 Gene

Publications for SNORD25 Gene

  1. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 2 3
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  3. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3
  4. Genomic analysis of high-risk smoldering multiple myeloma. (PMID: 22331267) López-Corral L … Gutiérrez NC (Haematologica 2012) 3
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD25 Gene

Sources for SNORD25 Gene