Aliases for SNORD23 Gene

Subcategory (RNA class) for SNORD23 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD23 Gene

  • Small Nucleolar RNA, C/D Box 23 2 3 5
  • SNORD23 2 5 170
  • HBII-115 2 3
  • SNODB922 177
  • RF00603 168

External Ids for SNORD23 Gene

Previous GeneCards Identifiers for SNORD23 Gene

  • GC19U900582
  • GC19P052941
  • GC19P048259
  • GC19P044685

Summaries for SNORD23 Gene

GeneCards Summary for SNORD23 Gene

SNORD23 (Small Nucleolar RNA, C/D Box 23) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD23 Gene

  • Small nucleolar RNA SNORD23

Additional gene information for SNORD23 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD23 Gene

Genomics for SNORD23 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD23 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD23 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD23 gene promoter:
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • Gfi-1
  • NF-1
  • NF-1/L
  • p53

Genomic Locations for SNORD23 Gene

Genomic Locations for SNORD23 Gene
chr19:47,755,853-47,755,962
(GRCh38/hg38)
Size:
110 bases
Orientation:
Plus strand
chr19:48,259,110-48,259,219
(GRCh37/hg19)
Size:
110 bases
Orientation:
Plus strand

Genomic View for SNORD23 Gene

Genes around SNORD23 on UCSC Golden Path with GeneCards custom track
SNORD23 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD23 Gene

Proteins for SNORD23 Gene

Post-translational modifications for SNORD23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD23 Gene

Domains & Families for SNORD23 Gene

Gene Families for SNORD23 Gene

genes like me logo Genes that share domains with SNORD23: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD23 Gene

Function for SNORD23 Gene

Phenotypes From GWAS Catalog for SNORD23 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD23 Gene

Localization for SNORD23 Gene

Gene Ontology (GO) - Cellular Components for SNORD23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD23: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD23 Gene

Pathways & Interactions for SNORD23 Gene

PathCards logo

SuperPathways for SNORD23 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD23 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD23: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD23 Gene

Drugs & Compounds for SNORD23 Gene

No Compound Related Data Available

Transcripts for SNORD23 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD23 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006D051B_9606 snoRNA 110 6

HGNC: 32718,

RefSeq: NR_003048,

Ensembl: ENST00000408876 (view in UCSC) ,

Rfam: RF00603,

snoDB: SNODB922,

snOPY: Homo_sapiens300562,

SNORD23 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD23 Gene

No ASD Table

Relevant External Links for SNORD23 Gene

GeneLoc Exon Structure for
SNORD23

No data available for mRNA/cDNA for SNORD23 Gene

Expression for SNORD23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD23 Gene

SOURCE GeneReport for Unigene cluster for SNORD23 Gene:

Hs.745561
genes like me logo Genes that share expression patterns with SNORD23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD23 Gene

Orthologs for SNORD23 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD23 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD23 31
  • 99 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORD23 31
  • 88 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snord23 31
  • 88 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORD23 31
  • 85 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia SNORD23 31
  • 65 (a)
OneToOne
Species where no ortholog for SNORD23 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD23 Gene

ENSEMBL:
Gene Tree for SNORD23 (if available)
TreeFam:
Gene Tree for SNORD23 (if available)

Paralogs for SNORD23 Gene

No data available for Paralogs for SNORD23 Gene

Variants for SNORD23 Gene

Additional dbSNP identifiers (rs#s) for SNORD23 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD23 Gene

Variant ID Type Subtype PubMed ID
esv3644559 CNV gain 21293372
nsv1058351 CNV gain 25217958
nsv1059189 CNV gain 25217958

Additional Variant Information for SNORD23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD23 Gene

Disorders for SNORD23 Gene

Additional Disease Information for SNORD23

No disorders were found for SNORD23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD23 Gene

Publications for SNORD23 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3
  2. SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing. (PMID: 26867678) Chen S … Voit R (Nature communications 2016) 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD23 Gene

Sources for SNORD23 Gene