Aliases for SNORD22 Gene

Subcategory (RNA class) for SNORD22 Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for SNORD22 Gene

  • Small Nucleolar RNA, C/D Box 22 2 3 5
  • RNA, U22 Small Nucleolar 2 3
  • SNORD22 2 176
  • RF00099 174
  • RNU22 3
  • U22 3

External Ids for SNORD22 Gene

Previous HGNC Symbols for SNORD22 Gene

  • RNU22

Previous GeneCards Identifiers for SNORD22 Gene

  • GC11M062393
  • GC11M062401
  • GC11M062411
  • GC11M062420
  • GC11M062621
  • GC11M058949
  • GC11M062664
  • GC11M062856
  • GC11M062865
  • GC11M062973
  • GC11M062964
  • GC11M062873
  • GC11M062881
  • GC11M062889
  • GC11M062897
  • GC11M062905
  • GC11M062913
  • GC11M062921
  • GC11M062942

Summaries for SNORD22 Gene

GeneCards Summary for SNORD22 Gene

SNORD22 (Small Nucleolar RNA, C/D Box 22) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD22 Gene

  • Small nucleolar RNA SNORD22

Additional gene information for SNORD22 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD22 Gene

Genomics for SNORD22 Gene

GeneHancer (GH) Regulatory Elements for SNORD22 Gene

Promoters and enhancers for SNORD22 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J062878 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.9 -28.8 -28809 5.9 SIN3A ZBTB40 SP1 CTCF SREBF1 ZBTB6 SMARCE1 RBPJ POLR2A TCF7L2 SLC3A2 HSALNG0084674 lnc-CHRM1-1 SNHG1 NXF1 GANAB EML3 CSKMT MTA2 TMEM179B
GH11J062712 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE dbSUPER 10.2 +139.0 138950 3.8 FOXA1 SP1 CBFA2T2 MLLT1 PRDM1 RXRA FOXA2 ZNF316 NR2C1 JUND piR-45619 HNRNPUL2 TTC9C UBXN1 LBHD1 LRRN4CL POLR2G GANAB B3GAT3 UQCC3
GH11J062887 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.7 -36.7 -36724 4 SIN3A MLX POLR2A NR2F6 ZNF362 HLF L3MBTL2 ZNF121 TEAD4 TFE3 NXF1 BSCL2 EML3 GANAB TAF6L TMEM179B STX5 SNHG1 MTA2 TUT1
GH11J062694 Enhancer 0.9 Ensembl ENCODE 10.5 +158.2 158170 1.1 CTCF CC2D1A RAD21 EGR1 ARID2 REST BACH1 TRIM22 ZNF143 ZNF561 BSCL2 TTC9C LBHD1 SNORA57 CSKMT ENSG00000255432 INTS5 GANAB UQCC3 EML3
GH11J062892 Enhancer 0.7 Ensembl 10.5 -39.7 -39666 0.2 SMARCE1 ZSCAN21 SMARCA4 TRIM24 DPF2 ATF1 HDAC1 ZNF316 SOX6 CTBP1 SLC3A2 SNHG1 SNORD22 SLC22A6 AHNAK HSALNG0084674 ENSG00000257002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD22 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD22 gene promoter:
  • AP-1
  • ATF-2
  • c-Jun
  • SREBP-1b
  • SREBP-1c

Genomic Locations for SNORD22 Gene

Genomic Locations for SNORD22 Gene
chr11:62,852,910-62,853,035
(GRCh38/hg38)
Size:
126 bases
Orientation:
Minus strand
chr11:62,619,460-62,623,386
(GRCh37/hg19)
Size:
3,927 bases
Orientation:
Minus strand

Genomic View for SNORD22 Gene

Genes around SNORD22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD22 Gene

Proteins for SNORD22 Gene

Post-translational modifications for SNORD22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD22 Gene

Domains & Families for SNORD22 Gene

Gene Families for SNORD22 Gene

genes like me logo Genes that share domains with SNORD22: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD22 Gene

Function for SNORD22 Gene

Phenotypes From GWAS Catalog for SNORD22 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD22 Gene

Localization for SNORD22 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD22 gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD22 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD22: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD22 Gene

Pathways & Interactions for SNORD22 Gene

PathCards logo

SuperPathways for SNORD22 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD22 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD22: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD22 Gene

Drugs & Compounds for SNORD22 Gene

No Compound Related Data Available

Transcripts for SNORD22 Gene

mRNA/cDNA for SNORD22 Gene

(1) REFSEQ mRNAs :
(522) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) ENA transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD22 Gene

No ASD Table

Relevant External Links for SNORD22 Gene

GeneLoc Exon Structure for
SNORD22
ECgene alternative splicing isoforms for
SNORD22

Expression for SNORD22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD22 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD22 Gene:

SNORD22

SOURCE GeneReport for Unigene cluster for SNORD22 Gene:

Hs.744737
genes like me logo Genes that share expression patterns with SNORD22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD22 Gene

Orthologs for SNORD22 Gene

Evolution for SNORD22 Gene

ENSEMBL:
Gene Tree for SNORD22 (if available)
TreeFam:
Gene Tree for SNORD22 (if available)

No data available for Orthologs for SNORD22 Gene

Paralogs for SNORD22 Gene

No data available for Paralogs for SNORD22 Gene

Variants for SNORD22 Gene

Sequence variations from dbSNP and Humsavar for SNORD22 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1003373675 -- 62,852,614(-) G/A downstream_transcript_variant
rs1003457092 -- 62,853,276(-) C/G upstream_transcript_variant
rs1003477388 -- 62,853,524(-) T/C upstream_transcript_variant
rs1005826803 -- 62,854,068(-) A/C upstream_transcript_variant
rs1006912266 -- 62,853,601(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD22 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Additional Variant Information for SNORD22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD22 Gene

Disorders for SNORD22 Gene

Additional Disease Information for SNORD22

No disorders were found for SNORD22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD22 Gene

Publications for SNORD22 Gene

  1. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey MR … Matera AG (Histochemistry and cell biology 1997) 2 3 23 56
  2. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski KT … Steitz JA (Nature 1996) 2 3 23 56
  3. Requirement for intron-encoded U22 small nucleolar RNA in 18S ribosomal RNA maturation. (PMID: 7985025) Tycowski KT … Steitz JA (Science (New York, N.Y.) 1994) 3 23 56
  4. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3 56
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 56

Products for SNORD22 Gene

Sources for SNORD22 Gene