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SNORD1C Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 1C

GCID:
GC17P076574
GIFtS:
12
Genes Participants
UDN Logo

Aliases for SNORD1C Gene

Subcategory (RNA class) for SNORD1C Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD1C Gene

  • Small Nucleolar RNA, C/D Box 1C 2 3 5
  • R38c SnoRNA 3
  • SnR38C 3
  • R38C 3

External Ids for SNORD1C Gene

ORGUL Members for SNORD1C Gene

Previous GeneCards Identifiers for SNORD1C Gene

  • GC17U900726
  • GC17P072079
  • GC17P074553
  • GC17P069982
  • GC17P074560
  • GC17P076560
  • GC17P076563
  • GC17P076566

Summaries for SNORD1C Gene

GeneCards Summary for SNORD1C Gene

SNORD1C (Small Nucleolar RNA, C/D Box 1C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD1C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD1C Gene

Genomics for SNORD1C Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD1C Gene

Promoters and enhancers for SNORD1C Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J076555 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 650.7 +0.7 667 8.1 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF143 SP3 NFYC ZNF610 SNHG16 ENSG00000267546 CYGB GC17P076607 GC17P076618 GC17P076621 GC17P076624 PIR56918 SNORD1B SNORD1C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD1C on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD1C gene promoter:
  • E2F-5
  • E2F-4
  • E2F-3a
  • E2F-2
  • E2F-1
  • E2F
  • GATA-3
  • NF-kappaB
  • NF-kappaB1
  • RelA

Genomic Locations for SNORD1C Gene

Genomic Locations for SNORD1C Gene
chr17:76,558,791-76,558,869
(GRCh38/hg38)
Size:
79 bases
Orientation:
Plus strand
chr17:74,553,848-74,561,430
(GRCh37/hg19)
Size:
7,583 bases
Orientation:
Plus strand

Genomic View for SNORD1C Gene

Genes around SNORD1C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD1C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD1C Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD1C Gene

Proteins for SNORD1C Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD1C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD1C Gene

Domains & Families for SNORD1C Gene

Gene Families for SNORD1C Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD1C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD1C Gene

Function for SNORD1C Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD1C Gene

Localization for SNORD1C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD1C Gene

Pathways & Interactions for SNORD1C Gene

SuperPathways for SNORD1C Gene

PathCards logo More details on SuperPathways for SNORD1C
No Data Available

Interacting Proteins for SNORD1C Gene

Gene Ontology (GO) - Biological Process for SNORD1C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD1C Gene

Drugs & Compounds for SNORD1C Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD1C Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD1C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD1C Gene

No ASD Table

Relevant External Links for SNORD1C Gene

GeneLoc Exon Structure for
SNORD1C
ECgene alternative splicing isoforms for
SNORD1C

Expression for SNORD1C Gene

Products:

  1. Primer
  2. Gene Expression Assay

NURSA nuclear receptor signaling pathways regulating expression of SNORD1C Gene:

SNORD1C
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD1C Gene

Orthologs for SNORD1C Gene

Evolution for SNORD1C Gene

ENSEMBL:
Gene Tree for SNORD1C (if available)
TreeFam:
Gene Tree for SNORD1C (if available)

No data available for Orthologs for SNORD1C Gene

Paralogs for SNORD1C Gene

No data available for Paralogs for SNORD1C Gene

Variants for SNORD1C Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD1C Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1001154963 -- 76,557,980(+) A/C upstream_transcript_variant
rs1001250913 -- 76,557,140(+) G/C upstream_transcript_variant
rs1001703497 -- 76,557,383(+) A/G upstream_transcript_variant
rs1002250341 -- 76,558,202(+) G/A/T upstream_transcript_variant
rs1002564652 -- 76,559,326(+) C/G/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD1C Gene

Variant ID Type Subtype PubMed ID
esv3641290 CNV gain 21293372
esv3641291 CNV gain 21293372
nsv828107 CNV loss 20364138

Additional Variant Information for SNORD1C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD1C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD1C Gene

Disorders for SNORD1C Gene

Additional Disease Information for SNORD1C

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD1C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD1C Gene

Publications for SNORD1C Gene

  1. Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H … Qu LH (Gene 2004) 2 3 58
  2. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 3 58
  3. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L … Tomasson MH (The Journal of clinical investigation 2012) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD1C Gene

Sources for SNORD1C Gene

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