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Aliases for SNORD1B Gene

Subcategory (RNA class) for SNORD1B Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD1B Gene

  • Small Nucleolar RNA, C/D Box 1B 2 3 5
  • R38b SnoRNA 3
  • SnR38B 3
  • R38B 3

External Ids for SNORD1B Gene

ORGUL Members for SNORD1B Gene

Previous GeneCards Identifiers for SNORD1B Gene

  • GC17U900725
  • GC17P072077
  • GC17P074558
  • GC17P069984
  • GC17P074561
  • GC17P074576
  • GC17P074590
  • GC17P074602

Summaries for SNORD1B Gene

GeneCards Summary for SNORD1B Gene

SNORD1B (Small Nucleolar RNA, C/D Box 1B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD1B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD1B Gene

Genomics for SNORD1B Gene

GeneHancer (GH) Regulatory Elements for SNORD1B Gene

Promoters and enhancers for SNORD1B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J076555 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 650.7 -1.7 -1650 8.1 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF143 SP3 NFYC ZNF610 SNHG16 ENSG00000267546 CYGB GC17P076607 GC17P076618 GC17P076621 GC17P076624 PIR56918 SNORD1B SNORD1C
GH17J076505 Enhancer 1.4 Ensembl ENCODE dbSUPER 12.2 -54.7 -54667 1.1 HDGF ATF1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ARID2 SNHG16 SNORD1B AANAT UBE2O PRCD CYGB SPHK1 PRPSAP1 FBF1 RHBDF2
GH17J076599 Enhancer 1.2 Ensembl ENCODE 12.3 +40.4 40354 3.7 PKNOX1 SMAD1 ATF1 ARNT POLR2B ZNF766 GATA2 FOS ATF7 CAVIN1 SRSF2 UNK ENSG00000267342 METTL23 TRIM65 ENSG00000267801 RNU6-227P ENSG00000267546 H3F3B ST6GALNAC2
GH17J076692 Enhancer 0.5 dbSUPER 11.7 +132.5 132537 2.3 SAP130 GLIS1 NR2F1 PRPF4 NR2F6 RARA MXRA7 RNU6-227P METTL23 JMJD6 SNORD1B PRCD CYGB RNU6-97P UBE2O AANAT
GH17J076604 Enhancer 0.4 ENCODE 11.9 +43.9 43906 0.2 L3MBTL2 ELF1 RNU6-227P SNORD1B SNHG16 CYGB PRCD AANAT UBE2O ST6GALNAC2 GC17M076570 ST6GALNAC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD1B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD1B gene promoter:
  • E2F
  • E2F-5
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • STAT5A
  • MyoD
  • c-Myc
  • Max1

Genomic Locations for SNORD1B Gene

Genomic Locations for SNORD1B Gene
chr17:76,561,108-76,561,193
(GRCh38/hg38)
Size:
86 bases
Orientation:
Plus strand
chr17:74,557,190-74,557,275
(GRCh37/hg19)
Size:
86 bases
Orientation:
Plus strand

Genomic View for SNORD1B Gene

Genes around SNORD1B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD1B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD1B Gene

Proteins for SNORD1B Gene

Post-translational modifications for SNORD1B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD1B Gene

Domains & Families for SNORD1B Gene

Gene Families for SNORD1B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD1B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD1B Gene

Function for SNORD1B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD1B Gene

Localization for SNORD1B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD1B Gene

Pathways & Interactions for SNORD1B Gene

SuperPathways for SNORD1B Gene

No Data Available

Interacting Proteins for SNORD1B Gene

Gene Ontology (GO) - Biological Process for SNORD1B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD1B Gene

Drugs & Compounds for SNORD1B Gene

No Compound Related Data Available

Transcripts for SNORD1B Gene

mRNA/cDNA for SNORD1B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD1B Gene

No ASD Table

Relevant External Links for SNORD1B Gene

GeneLoc Exon Structure for
SNORD1B
ECgene alternative splicing isoforms for
SNORD1B

Expression for SNORD1B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD1B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD1B Gene:

SNORD1B
genes like me logo Genes that share expression patterns with SNORD1B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD1B Gene

Orthologs for SNORD1B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD1B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia snoR38 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia snoR38 34
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia snoR38 34 34
  • 85 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia snoR38 34
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia snoR38 34
  • 64 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord1a 34
  • 61 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia snoR38 34 34
  • 65 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii snoR38 34
  • 59 (a)
OneToOne
Species where no ortholog for SNORD1B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD1B Gene

ENSEMBL:
Gene Tree for SNORD1B (if available)
TreeFam:
Gene Tree for SNORD1B (if available)

Paralogs for SNORD1B Gene

No data available for Paralogs for SNORD1B Gene

Variants for SNORD1B Gene

Sequence variations from dbSNP and Humsavar for SNORD1B Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1001121602 -- 76,561,191(+) A/T non_coding_transcript_variant
rs1001469666 -- 76,560,974(+) C/G upstream_transcript_variant
rs1002183840 -- 76,560,340(+) G/A upstream_transcript_variant
rs1002230934 -- 76,560,587(+) G/C upstream_transcript_variant
rs1002564652 -- 76,559,326(+) C/G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD1B Gene

Variant ID Type Subtype PubMed ID
esv3641290 CNV gain 21293372
esv3641291 CNV gain 21293372
nsv828107 CNV loss 20364138

Additional Variant Information for SNORD1B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD1B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD1B Gene

Disorders for SNORD1B Gene

Additional Disease Information for SNORD1B

No disorders were found for SNORD1B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD1B Gene

Publications for SNORD1B Gene

  1. Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H … Qu LH (Gene 2004) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD1B Gene

Sources for SNORD1B Gene

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