Aliases for SNORD1B Gene

Subcategory (RNA class) for SNORD1B Gene

snoRNA

Number of RNA Genes sources:

4 / 17

Aliases for SNORD1B Gene

  • Small Nucleolar RNA, C/D Box 1B 2 3 5
  • SNORD1B 2 5 170
  • SnR38B 2 3
  • R38B 2 3
  • R38b SnoRNA 3
  • SNODB1628 177
  • SNODB126 177
  • RF00213 168

External Ids for SNORD1B Gene

Previous GeneCards Identifiers for SNORD1B Gene

  • GC17U900725
  • GC17P072077
  • GC17P074558
  • GC17P069984
  • GC17P074561
  • GC17P074576
  • GC17P074590
  • GC17P074602

Summaries for SNORD1B Gene

GeneCards Summary for SNORD1B Gene

SNORD1B (Small Nucleolar RNA, C/D Box 1B) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD1B Gene

Additional gene information for SNORD1B Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD1B Gene

Genomics for SNORD1B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD1B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD1B on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD1B gene promoter:
  • c-Myc
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • Max1
  • MyoD
  • STAT5A

Genomic Locations for SNORD1B Gene

Genomic Locations for SNORD1B Gene
chr17:76,561,108-76,561,193
(GRCh38/hg38)
Size:
86 bases
Orientation:
Plus strand
chr17:74,557,190-74,557,275
(GRCh37/hg19)
Size:
86 bases
Orientation:
Plus strand

Genomic View for SNORD1B Gene

Genes around SNORD1B on UCSC Golden Path with GeneCards custom track
SNORD1B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD1B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD1B Gene

Proteins for SNORD1B Gene

Post-translational modifications for SNORD1B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD1B Gene

Domains & Families for SNORD1B Gene

Gene Families for SNORD1B Gene

genes like me logo Genes that share domains with SNORD1B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD1B Gene

Function for SNORD1B Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD1B Gene

Localization for SNORD1B Gene

Gene Ontology (GO) - Cellular Components for SNORD1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD1B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD1B Gene

Pathways & Interactions for SNORD1B Gene

PathCards logo

SuperPathways for SNORD1B Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD1B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD1B: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD1B Gene

Drugs & Compounds for SNORD1B Gene

No Compound Related Data Available

Transcripts for SNORD1B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD1B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000031EDF0_9606 snoRNA 86 4

HGNC: 32676,

RefSeq: NR_004396,

snoDB: SNODB126,

ENA: AJ543325.1:1..86:ncRNA,

URS0000634240_9606 snoRNA 84 4

Ensembl: ENST00000363091 (view in UCSC) ,

Rfam: RF00213,

snoDB: SNODB1628,

snOPY: Homo_sapiens300041,

SNORD1B in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD1B Gene

No ASD Table

Relevant External Links for SNORD1B Gene

GeneLoc Exon Structure for
SNORD1B

No data available for mRNA/cDNA for SNORD1B Gene

Expression for SNORD1B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD1B Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD1B

genes like me logo Genes that share expression patterns with SNORD1B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD1B Gene

Orthologs for SNORD1B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD1B Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia snoR38 31
  • 100 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia snoR38 31
  • 86 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia snoR38 31 31
  • 68 (a)
OneToMany
Oppossum
(Monodelphis domestica)
Mammalia snoR38 31
  • 64 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia snoR38 31
  • 64 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia Snord1a 31
  • 61 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia snoR38 31 31
  • 65 (a)
OneToMany
Zebrafish
(Danio rerio)
Actinopterygii snoR38 31
  • 59 (a)
OneToOne
Species where no ortholog for SNORD1B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD1B Gene

ENSEMBL:
Gene Tree for SNORD1B (if available)
TreeFam:
Gene Tree for SNORD1B (if available)

Paralogs for SNORD1B Gene

No data available for Paralogs for SNORD1B Gene

Variants for SNORD1B Gene

Additional dbSNP identifiers (rs#s) for SNORD1B Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD1B Gene

Variant ID Type Subtype PubMed ID
esv3641290 CNV gain 21293372
esv3641291 CNV gain 21293372
nsv828107 CNV loss 20364138

Additional Variant Information for SNORD1B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD1B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD1B Gene

Disorders for SNORD1B Gene

Additional Disease Information for SNORD1B

No disorders were found for SNORD1B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD1B Gene

Publications for SNORD1B Gene

  1. Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H … Qu LH (Gene 2004) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD1B Gene

Sources for SNORD1B Gene