SNORD1A Gene (RNA Gene)

Small Nucleolar RNA, C/D Box 1A

GC17P076618
GIFtS:
12

Aliases for SNORD1A Gene

Subcategory (RNA class) for SNORD1A Gene

snoRNA

Quality Score for this RNA gene is

15

Aliases for SNORD1A Gene

  • Small Nucleolar RNA, C/D Box 1A 2 3 5
  • SNORD1A 2 176
  • R38a SnoRNA 3
  • RF00213 174
  • SnR38A 3
  • R38A 3

External Ids for SNORD1A Gene

Previous GeneCards Identifiers for SNORD1A Gene

  • GC17U900724
  • GC17P072078
  • GC17P074557
  • GC17P069985
  • GC17P074588
  • GC17P076562
  • GC17P076564
  • GC17P076613
  • GC17P076635
  • GC17P076570
  • GC17P076577
  • GC17P076582
  • GC17P076585
  • GC17P076589
  • GC17P076596
  • GC17P076601
  • GC17P076607

Summaries for SNORD1A Gene

GeneCards Summary for SNORD1A Gene

SNORD1A (Small Nucleolar RNA, C/D Box 1A) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD1A Gene

Additional gene information for SNORD1A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD1A Gene

Genomics for SNORD1A Gene

GeneHancer (GH) Regulatory Elements for SNORD1A Gene

Promoters and enhancers for SNORD1A Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J076555 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.6 -2.2 -2175 8.1 SIN3A ZBTB40 CTCF SIX5 SMARCE1 RBPJ POLR2A NR2F6 ATF1 CREB1 SNHG16 ENSG00000267546 AB447886 CYGB SNORD1B SNORD1C piR-36494 piR-61919 UNK SRSF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD1A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD1A gene promoter:
  • c-Myc
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • Max1
  • MyoD
  • STAT5A

Genomic Locations for SNORD1A Gene

Genomic Locations for SNORD1A Gene
chr17:76,561,633-76,561,706
(GRCh38/hg38)
Size:
74 bases
Orientation:
Plus strand
chr17:74,553,848-74,561,430
(GRCh37/hg19)
Size:
7,583 bases
Orientation:
Plus strand

Genomic View for SNORD1A Gene

Genes around SNORD1A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD1A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD1A Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD1A Gene

Proteins for SNORD1A Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD1A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD1A Gene

Domains & Families for SNORD1A Gene

Gene Families for SNORD1A Gene

HGNC:
genes like me logo Genes that share domains with SNORD1A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD1A Gene

Function for SNORD1A Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD1A Gene

Localization for SNORD1A Gene

Gene Ontology (GO) - Cellular Components for SNORD1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD1A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD1A Gene

Pathways & Interactions for SNORD1A Gene

PathCards logo

SuperPathways for SNORD1A Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD1A: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD1A Gene

Drugs & Compounds for SNORD1A Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD1A Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD1A Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(1) ENA transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD1A Gene

No ASD Table

Relevant External Links for SNORD1A Gene

GeneLoc Exon Structure for
SNORD1A
ECgene alternative splicing isoforms for
SNORD1A

Expression for SNORD1A Gene

Products:

  1. Primer
  2. Gene Expression Assay

NURSA nuclear receptor signaling pathways regulating expression of SNORD1A Gene:

SNORD1A
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD1A Gene

Orthologs for SNORD1A Gene

Evolution for SNORD1A Gene

ENSEMBL:
Gene Tree for SNORD1A (if available)
TreeFam:
Gene Tree for SNORD1A (if available)

No data available for Orthologs for SNORD1A Gene

Paralogs for SNORD1A Gene

No data available for Paralogs for SNORD1A Gene

Variants for SNORD1A Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD1A Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1001121602 -- 76,561,191(+) A/T upstream_transcript_variant
rs1001375879 -- 76,562,189(+) A/T downstream_transcript_variant
rs1001469666 -- 76,560,974(+) C/G upstream_transcript_variant
rs1002183840 -- 76,560,340(+) G/A upstream_transcript_variant
rs1002230934 -- 76,560,587(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD1A Gene

Variant ID Type Subtype PubMed ID
esv3641290 CNV gain 21293372
esv3641291 CNV gain 21293372
nsv828107 CNV loss 20364138

Additional Variant Information for SNORD1A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD1A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD1A Gene

Disorders for SNORD1A Gene

Additional Disease Information for SNORD1A

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD1A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD1A Gene

Publications for SNORD1A Gene

  1. Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H … Qu LH (Gene 2004) 2 3 56
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56

ExternalLinks

View latest publications for SNORD1A gene in Mastermind

Products for SNORD1A Gene

Sources for SNORD1A Gene