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Aliases for SNORD1A Gene
Data sources for SNORD1A Gene:
Subcategory (RNA class) for SNORD1A Gene
snoRNA
Aliases for SNORD1A Gene
- Small Nucleolar RNA, C/D Box 1A (HGNC, NCBI Entrez Gene, Ensembl)
- SNORD1A (Ensembl, snOPY)
- SnR38A (HGNC, NCBI Entrez Gene)
- R38A (HGNC, NCBI Entrez Gene)
- R38a SnoRNA (NCBI Entrez Gene)
- SNODB1285 (snoDB)
- SNODB1990 (snoDB)
- SNODB114 (snoDB)
- RF00213 (Rfam)
External Ids for SNORD1A Gene
- HGNC: 32556
- NCBI Entrez Gene: 677848
- Ensembl: ENSG00000278261
Previous GeneCards Identifiers for SNORD1A Gene
- GC17U900724
- GC17P072078
- GC17P074557
- GC17P069985
- GC17P074588
- GC17P076562
- GC17P076564
- GC17P076613
- GC17P076635
- GC17P076618
- GC17P076653
- GC17P076570
- GC17P076577
- GC17P076582
- GC17P076585
- GC17P076589
- GC17P076596
- GC17P076601
- GC17P076607
- GC17P076681
Summaries for SNORD1A Gene
GeneCards Summary for SNORD1A Gene
SNORD1A (Small Nucleolar RNA, C/D Box 1A) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORD1A Gene
-
Small nucleolar RNA R38
Additional gene information for SNORD1A Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD1A Gene
Genomics for SNORD1A Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORD1A Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J076555 | Promoter/Enhancer | 2.1 | EPDnew Ensembl ENCODE CraniofacialAtlas | 0.7 | -2.2 | -2175 | 8.1 | CHD2 TBP ZBTB10 MXD4 FEZF1 CEBPA SIX5 NR2C1 MNT IKZF1 | ENSG00000267546 AB447886 CYGB SNORD1B SNORD1C piR-36494 piR-61919 ENSG00000267543 SNHG16 MGAT5B |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD1A on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORD1A gene promoter:
-
- c-Myc
- E2F
- E2F-1
- E2F-2
- E2F-3a
- E2F-4
- E2F-5
- Max1
- MyoD
- STAT5A
Genomic Locations for SNORD1A Gene
Latest Assembly
- chr17:76,561,633-76,561,706
- (GRCh38/hg38)
- Size:
- 74 bases
- Orientation:
- Plus strand
Previous Assembly
- chr17:74,557,715-74,557,788
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 74 bases
- Orientation:
- Plus strand
Genomic View for SNORD1A Gene
Genes around SNORD1A on UCSC Golden Path with GeneCards custom track
SNORD1A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q25.1 by HGNC
- 17q25.1 by Entrez Gene
- 17q25.1 by Ensembl
SNORD1A Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD1A Gene
Proteins for SNORD1A Gene
Post-translational modifications for SNORD1A Gene
No Post-translational modifications
No data available for DME Specific Peptides for SNORD1A Gene
Domains & Families for SNORD1A Gene
Gene Families for SNORD1A Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD1A Gene
Function for SNORD1A Gene
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD1A - Starting at $85 >
- * SNORD1A CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD1A Gene
Localization for SNORD1A Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
| endoplasmic reticulum | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD1A Gene
Pathways & Interactions for SNORD1A Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD1A Gene
Transcripts for SNORD1A Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD1A Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00002EC433_9606 | snoRNA | 74 | 3 |
RefSeq: NR_004395, snoDB: SNODB114, ENA: AJ543324.1:1..74:ncRNA, |
| URS000072C309_9606 | snoRNA | 72 | 3 |
Ensembl: ENST00000364968 (view in UCSC) , Rfam: RF00213, snoDB: SNODB1285, |
| URS000082032F_9606 | snoRNA | 72 | 2 |
snoDB: SNODB1990, snOPY: Homo_sapiens300042, |
| URS0001BC0FF7_9606 | snoRNA | 72 | 1 |
Rfam: RF00213, |
SNORD1A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for SNORD1A - Starting at $85 >
- * SNORD1A CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
Clone products for research
Relevant External Links for SNORD1A Gene
- GeneLoc Exon Structure for
- SNORD1A
No data available for mRNA/cDNA for SNORD1A Gene
Expression for SNORD1A Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD1A
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD1A Gene
Orthologs for SNORD1A Gene
No data available for Orthologs for SNORD1A Gene
Paralogs for SNORD1A Gene
No data available for Paralogs for SNORD1A Gene
Variants for SNORD1A Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3641290 | CNV | gain | 21293372 |
| esv3641291 | CNV | gain | 21293372 |
| nsv828107 | CNV | loss | 20364138 |
Additional Variant Information for SNORD1A Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD1A
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD1A Gene
Disorders for SNORD1A Gene
Additional Disease Information for SNORD1A
No disorders were found for SNORD1A Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD1A Gene
Publications for SNORD1A Gene
- Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H … Qu LH (Gene 2004) 2 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
ExternalLinks
Products for SNORD1A Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD1A
- Origene Custom Protein Services for SNORD1A
- Browse OriGene Inhibitory RNA Products For SNORD1A
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD1A
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD1A
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD1A
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD1A
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD1A
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD1A
Sources for SNORD1A Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB