Aliases for SNORD1A Gene

Data sources for SNORD1A Gene:

Subcategory (RNA class) for SNORD1A Gene

snoRNA

Aliases for SNORD1A Gene

External Ids for SNORD1A Gene

Previous GeneCards Identifiers for SNORD1A Gene

  • GC17U900724
  • GC17P072078
  • GC17P074557
  • GC17P069985
  • GC17P074588
  • GC17P076562
  • GC17P076564
  • GC17P076613
  • GC17P076635
  • GC17P076618
  • GC17P076653
  • GC17P076570
  • GC17P076577
  • GC17P076582
  • GC17P076585
  • GC17P076589
  • GC17P076596
  • GC17P076601
  • GC17P076607
  • GC17P076681

Summaries for SNORD1A Gene

GeneCards Summary for SNORD1A Gene

SNORD1A (Small Nucleolar RNA, C/D Box 1A) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD1A Gene

Additional gene information for SNORD1A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD1A Gene

Genomics for SNORD1A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD1A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J076555 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 -2.2 -2175 8.1 CHD2 TBP ZBTB10 MXD4 FEZF1 CEBPA SIX5 NR2C1 MNT IKZF1 ENSG00000267546 AB447886 CYGB SNORD1B SNORD1C piR-36494 piR-61919 ENSG00000267543 SNHG16 MGAT5B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD1A on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD1A gene promoter:
  • c-Myc
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • Max1
  • MyoD
  • STAT5A

Genomic Locations for SNORD1A Gene

Latest Assembly
chr17:76,561,633-76,561,706
(GRCh38/hg38)
Size:
74 bases
Orientation:
Plus strand

Previous Assembly
chr17:74,557,715-74,557,788
(GRCh37/hg19 by Entrez Gene)
Size:
74 bases
Orientation:
Plus strand

Genomic View for SNORD1A Gene

Genes around SNORD1A on UCSC Golden Path with GeneCards custom track
SNORD1A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD1A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD1A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD1A Gene

Proteins for SNORD1A Gene

Post-translational modifications for SNORD1A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD1A Gene

Domains & Families for SNORD1A Gene

Gene Families for SNORD1A Gene

genes like me logo Genes that share domains with SNORD1A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD1A Gene

Function for SNORD1A Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD1A Gene

Localization for SNORD1A Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD1A gene
Compartment Confidence
nucleus 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for SNORD1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD1A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD1A Gene

Pathways & Interactions for SNORD1A Gene

PathCards logo

SuperPathways for SNORD1A Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD1A: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD1A Gene

Drugs & Compounds for SNORD1A Gene

No Compound Related Data Available

Transcripts for SNORD1A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD1A Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002EC433_9606 snoRNA 74 3

RefSeq: NR_004395,

snoDB: SNODB114,

ENA: AJ543324.1:1..74:ncRNA,

URS000072C309_9606 snoRNA 72 3

Ensembl: ENST00000364968 (view in UCSC) ,

Rfam: RF00213,

snoDB: SNODB1285,

URS000082032F_9606 snoRNA 72 2

snoDB: SNODB1990,

snOPY: Homo_sapiens300042,

URS0001BC0FF7_9606 snoRNA 72 1

Rfam: RF00213,

SNORD1A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD1A Gene

No ASD Table

Relevant External Links for SNORD1A Gene

GeneLoc Exon Structure for
SNORD1A

No data available for mRNA/cDNA for SNORD1A Gene

Expression for SNORD1A Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD1A

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD1A Gene

Orthologs for SNORD1A Gene

Evolution for SNORD1A Gene

ENSEMBL:
Gene Tree for SNORD1A (if available)
TreeFam:
Gene Tree for SNORD1A (if available)

No data available for Orthologs for SNORD1A Gene

Paralogs for SNORD1A Gene

No data available for Paralogs for SNORD1A Gene

Variants for SNORD1A Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD1A Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORD1A Gene

Variant ID Type Subtype PubMed ID
esv3641290 CNV gain 21293372
esv3641291 CNV gain 21293372
nsv828107 CNV loss 20364138

Additional Variant Information for SNORD1A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD1A

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD1A Gene

Disorders for SNORD1A Gene

Additional Disease Information for SNORD1A

No disorders were found for SNORD1A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD1A Gene

Publications for SNORD1A Gene

  1. Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H … Qu LH (Gene 2004) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD1A Gene

Sources for SNORD1A Gene