Aliases for SNORD1A Gene
Subcategory (RNA class) for SNORD1A Gene
snoRNA
Quality Score for this RNA gene is
13
External Ids for SNORD1A Gene
- HGNC: 32556
- Entrez Gene: 677848
- Ensembl: ENSG00000278261
Previous GeneCards Identifiers for SNORD1A Gene
- GC17U900724
- GC17P072078
- GC17P074557
- GC17P069985
- GC17P074588
- GC17P076562
- GC17P076564
- GC17P076570
- GC17P076577
- GC17P076582
- GC17P076585
- GC17P076589
- GC17P076596
Summaries for SNORD1A Gene
GeneCards Summary for SNORD1A Gene
SNORD1A (Small Nucleolar RNA, C/D Box 1A) is an RNA Gene, and is affiliated with the snoRNA class.
Additional gene information for SNORD1A Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD1A Gene
Genomics for SNORD1A Gene
GeneHancer (GH) Regulatory Elements for SNORD1A Gene
Promoters and enhancers for SNORD1A Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J076555 | Promoter/Enhancer | 2.3 | EPDnew Ensembl ENCODE | 0.7 | -2.2 | -2175 | 8.1 | CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF143 SP3 NFYC ZNF610 | SNHG16 ENSG00000267546 GC17P076607 GC17P076618 GC17P076621 GC17P076624 PIR56918 SNORD1B SNORD1C PIR59539 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around SNORD1A on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the SNORD1A gene promoter:
-
- E2F
- E2F-5
- E2F-1
- E2F-2
- E2F-3a
- E2F-4
- STAT5A
- MyoD
- Max1
- c-Myc
Regulatory Element Products
Genomic Locations for SNORD1A Gene
Genomic Locations for SNORD1A Gene
- chr17:76,561,633-76,561,706
- (GRCh38/hg38)
- Size:
- 74 bases
- Orientation:
- Plus strand
- chr17:74,553,848-74,561,430
- (GRCh37/hg19)
- Size:
- 7,583 bases
- Orientation:
- Plus strand
Genomic View for SNORD1A Gene
Genes around SNORD1A on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q25.1 by Entrez Gene
- 17q25.1 by HGNC
- 17q25.1 by Ensembl
SNORD1A Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD1A Gene
Proteins for SNORD1A Gene
Post-translational modifications for SNORD1A Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for SNORD1A
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD1A
- Origene Custom Protein Services for SNORD1A
- Search GeneTex for Proteins for SNORD1A
No data available for DME Specific Peptides for SNORD1A Gene
Domains & Families for SNORD1A Gene
Gene Families for SNORD1A Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD1A Gene
Function for SNORD1A Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for SNORD1A
-
CRISPR Products
- Browse CRISPR knockouts for SNORD1A
- Applied Biological Materials CRISPR for SNORD1A
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
Inhibitory RNA Products
Clone Products
- GenScript: Custom all cDNA clones Services for SNORD1A
- VectorBuilder custom plasmid, inducible vectors for SNORD1A
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNORD1A
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for SNORD1A
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD1A Gene
Localization for SNORD1A Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD1A Gene
Transcripts for SNORD1A Gene
mRNA/cDNA for SNORD1A Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000364968 72 bps (uc060kky.1)
- (2) RNA Central transcripts :
CRISPR Products
- Browse CRISPR knockouts for SNORD1A
- Applied Biological Materials CRISPR for SNORD1A
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
Inhibitory RNA Products
Clone Products
- GenScript: Custom all cDNA clones Services for SNORD1A
- VectorBuilder custom plasmid, inducible vectors for SNORD1A
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNORD1A
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for SNORD1A
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for SNORD1A Gene
NURSA nuclear receptor signaling pathways regulating expression of SNORD1A Gene:
SNORD1A
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD1A Gene
Orthologs for SNORD1A Gene
No data available for Orthologs for SNORD1A Gene
Paralogs for SNORD1A Gene
No data available for Paralogs for SNORD1A Gene
Variants for SNORD1A Gene
| SNP ID | Clin | Chr 17 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1001121602 | -- | 76,561,191(+) | A/T | upstream_transcript_variant | |
| rs1001375879 | -- | 76,562,189(+) | A/T | downstream_transcript_variant | |
| rs1001469666 | -- | 76,560,974(+) | C/G | upstream_transcript_variant | |
| rs1002183840 | -- | 76,560,340(+) | G/A | upstream_transcript_variant | |
| rs1002230934 | -- | 76,560,587(+) | G/C | upstream_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| nsv828107 | CNV | loss | 20364138 |
| esv3641291 | CNV | gain | 21293372 |
| esv3641290 | CNV | gain | 21293372 |
Additional Variant Information for SNORD1A Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD1A
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD1A Gene
Disorders for SNORD1A Gene
Additional Disease Information for SNORD1A
No disorders were found for SNORD1A Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD1A Gene
Publications for SNORD1A Gene
- Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H … Qu LH (Gene 2004) 2 3 58
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
Products for SNORD1A Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Human Proteins and Enzymes
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD1A
- Origene Custom Protein Services for SNORD1A
- Browse OriGene Inhibitory RNA Products For SNORD1A
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD1A
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD1A
- GenScript: Custom all cDNA clones Services for SNORD1A
- GenScript Custom Purified and Recombinant Proteins Services for SNORD1A
- GenScript Custom Assay Services for SNORD1A
- GenScript Custom overexpressing Cell Line Services for SNORD1A
- Browse GenScript CRISPR for SNORD1A
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for SNORD1A
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for SNORD1A
- VectorBuilder custom plasmid, inducible vectors for SNORD1A
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for SNORD1A
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for SNORD1A
- Search GeneTex for Proteins for SNORD1A
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD1A
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD1A
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD1A
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD1A
Sources for SNORD1A Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt