Aliases for SNORD1A Gene
Subcategory (RNA class) for SNORD1A Gene
snoRNA
Quality Score for this RNA gene is
15
Aliases for SNORD1A Gene
External Ids for SNORD1A Gene
- HGNC: 32556
- Entrez Gene: 677848
- Ensembl: ENSG00000278261
Previous GeneCards Identifiers for SNORD1A Gene
- GC17U900724
- GC17P072078
- GC17P074557
- GC17P069985
- GC17P074588
- GC17P076562
- GC17P076564
- GC17P076613
- GC17P076635
- GC17P076570
- GC17P076577
- GC17P076582
- GC17P076585
- GC17P076589
- GC17P076596
- GC17P076601
- GC17P076607
Summaries for SNORD1A Gene
GeneCards Summary for SNORD1A Gene
SNORD1A (Small Nucleolar RNA, C/D Box 1A) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORD1A Gene
-
Small nucleolar RNA R38
Additional gene information for SNORD1A Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD1A Gene
Genomics for SNORD1A Gene
GeneHancer (GH) Regulatory Elements for SNORD1A Gene
Promoters and enhancers for SNORD1A Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J076555 | Promoter/Enhancer | 2.1 | EPDnew Ensembl ENCODE CraniofacialAtlas | 0.6 | -2.2 | -2175 | 8.1 | SIN3A ZBTB40 CTCF SIX5 SMARCE1 RBPJ POLR2A NR2F6 ATF1 CREB1 | SNHG16 ENSG00000267546 AB447886 CYGB SNORD1B SNORD1C piR-36494 piR-61919 UNK SRSF2 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD1A on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the SNORD1A gene promoter:
-
- c-Myc
- E2F
- E2F-1
- E2F-2
- E2F-3a
- E2F-4
- E2F-5
- Max1
- MyoD
- STAT5A
Genomic Locations for SNORD1A Gene
Genomic Locations for SNORD1A Gene
- chr17:76,561,633-76,561,706
- (GRCh38/hg38)
- Size:
- 74 bases
- Orientation:
- Plus strand
- chr17:74,553,848-74,561,430
- (GRCh37/hg19)
- Size:
- 7,583 bases
- Orientation:
- Plus strand
Genomic View for SNORD1A Gene
Genes around SNORD1A on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q25.1 by HGNC
- 17q25.1 by Entrez Gene
- 17q25.1 by Ensembl
SNORD1A Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD1A Gene
Proteins for SNORD1A Gene
Post-translational modifications for SNORD1A Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD1A
- Origene Custom Protein Services for SNORD1A
No data available for DME Specific Peptides for SNORD1A Gene
Domains & Families for SNORD1A Gene
Gene Families for SNORD1A Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD1A Gene
Function for SNORD1A Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORD1A - Select products 50% OFF >
- * SNORD1A CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * SNORD1A CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for SNORD1A
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD1A Gene
Localization for SNORD1A Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD1A Gene
Pathways & Interactions for SNORD1A Gene
No data available for Pathways by source and SIGNOR curated interactions for SNORD1A Gene
Transcripts for SNORD1A Gene
mRNA/cDNA for SNORD1A Gene
- (1) REFSEQ mRNAs :
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000364968 72 bps (ENST00000364968.1)
- (3) RNACentral transcripts :
- (1) ENA transcripts :
- (1) Rfam transcripts :
- (1) snOPY transcripts :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORD1A - Select products 50% OFF >
- * SNORD1A CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * SNORD1A CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for SNORD1A
miRNA Products
Inhibitory RNA Products
Clone Products
Expression for SNORD1A Gene
NURSA nuclear receptor signaling pathways regulating expression of SNORD1A Gene:
SNORD1A
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD1A Gene
Orthologs for SNORD1A Gene
No data available for Orthologs for SNORD1A Gene
Paralogs for SNORD1A Gene
No data available for Paralogs for SNORD1A Gene
Variants for SNORD1A Gene
| SNP ID | Clin | Chr 17 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1001121602 | -- | 76,561,191(+) | A/T | upstream_transcript_variant | |
| rs1001375879 | -- | 76,562,189(+) | A/T | downstream_transcript_variant | |
| rs1001469666 | -- | 76,560,974(+) | C/G | upstream_transcript_variant | |
| rs1002183840 | -- | 76,560,340(+) | G/A | upstream_transcript_variant | |
| rs1002230934 | -- | 76,560,587(+) | G/C | upstream_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3641290 | CNV | gain | 21293372 |
| esv3641291 | CNV | gain | 21293372 |
| nsv828107 | CNV | loss | 20364138 |
Additional Variant Information for SNORD1A Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD1A
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD1A Gene
Disorders for SNORD1A Gene
Additional Disease Information for SNORD1A
No disorders were found for SNORD1A Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD1A Gene
Publications for SNORD1A Gene
- Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. (PMID: 14960365) Zhou H … Qu LH (Gene 2004) 2 3 56
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56
ExternalLinks
Products for SNORD1A Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD1A
- Origene Custom Protein Services for SNORD1A
- Browse OriGene Inhibitory RNA Products For SNORD1A
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD1A
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD1A
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD1A
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD1A
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD1A
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD1A
Sources for SNORD1A Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource