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Aliases for SNORD19 Gene

Subcategory (RNA class) for SNORD19 Gene


Quality Score for this RNA gene is


Aliases for SNORD19 Gene

  • Small Nucleolar RNA, C/D Box 19 2 3 5
  • HBII-108 3

External Ids for SNORD19 Gene

ORGUL Members for SNORD19 Gene

Previous GeneCards Identifiers for SNORD19 Gene

  • GC03U900638
  • GC03P052698
  • GC03P052723
  • GC03P052693
  • GC03P052710
  • GC03P052720
  • GC03P052737
  • GC03P052745
  • GC03P052750
  • GC03P052756
  • GC03P052760

Summaries for SNORD19 Gene

GeneCards Summary for SNORD19 Gene

SNORD19 (Small Nucleolar RNA, C/D Box 19) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD19 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD19 Gene

Genomics for SNORD19 Gene

GeneHancer (GH) Regulatory Elements for SNORD19 Gene

Promoters and enhancers for SNORD19 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J052769 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.4 +81.6 81647 2.1 HDGF FOXA2 SMAD1 ARID4B SIN3A DMAP1 IRF4 YY1 SLC30A9 POLR2B NEK4 PBRM1 RRP9 RFT1 ITIH3 ITIH4-AS1 ENSG00000243696 ITIH4 SNORD69 GNL3
GH03J052890 Enhancer 1.4 FANTOM5 Ensembl ENCODE 9.6 +203.4 203384 4.3 HDGF ATF1 FOXA2 MLX ARID4B DMAP1 IRF4 ETS1 YY1 ZNF207 ITIH4 ENSG00000243696 ITIH4-AS1 PBRM1 MUSTN1 SNORD69 ENSG00000252787 SNORD19 SNORD19B SNORD19C
GH03J052719 Enhancer 1 Ensembl ENCODE dbSUPER 11.4 +32.2 32208 3.1 ZNF680 MAX REST GABPA POLR2A EED TRIM24 MYC RUNX3 TRIM28 PBRM1 GNL3 SNORD69 SNORD19 SNORD19B SNORD19C ENSG00000252787 ITIH1 STAB1 SFMBT1
GH03J052466 Enhancer 1 VISTA FANTOM5 dbSUPER 10.8 -221.1 -221059 3 ZNF121 ATF4 POLR2A MNT PRDM1 NR2F2 NT5DC2 SEMA3G STAB1 SMIM4 RNU6-856P RNU6ATAC16P PBRM1 GNL3 ENSG00000252787 SNORD19
GH03J052606 Enhancer 0.8 ENCODE 10.9 -82.5 -82453 1.5 MEIS2 PKNOX1 NFIB SAP130 JUN RFX5 YY1 ZNF316 ZNF366 FOSL2 PBRM1 RNU6-856P GNL3 SNORD19 SNORD19B SNORD19C ENSG00000252787 SNORD69 RNU6ATAC16P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD19 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD19 gene promoter:
  • AP-1
  • PPAR-gamma2
  • PPAR-gamma1
  • Evi-1

Genomic Locations for SNORD19 Gene

Genomic Locations for SNORD19 Gene
76 bases
Plus strand
76 bases
Plus strand

Genomic View for SNORD19 Gene

Genes around SNORD19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD19 Gene

Proteins for SNORD19 Gene

Post-translational modifications for SNORD19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD19 Gene

Domains & Families for SNORD19 Gene

Gene Families for SNORD19 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD19: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD19 Gene

Function for SNORD19 Gene

Phenotypes From GWAS Catalog for SNORD19 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD19 Gene

Localization for SNORD19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD19 Gene

Pathways & Interactions for SNORD19 Gene

SuperPathways for SNORD19 Gene

No Data Available

Interacting Proteins for SNORD19 Gene

Gene Ontology (GO) - Biological Process for SNORD19 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD19 Gene

Drugs & Compounds for SNORD19 Gene

No Compound Related Data Available

Transcripts for SNORD19 Gene

mRNA/cDNA for SNORD19 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD19 Gene

No ASD Table

Relevant External Links for SNORD19 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD19 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD19 Gene:

genes like me logo Genes that share expression patterns with SNORD19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD19 Gene

Orthologs for SNORD19 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD19 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD19 34
  • 100 (a)
(Mus musculus)
Mammalia Snord19 34
  • 79 (a)
(Canis familiaris)
Mammalia SNORD19 34
  • 77 (a)
(Monodelphis domestica)
Mammalia SNORD19 34
  • 73 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD19 34
  • 70 (a)
(Bos Taurus)
Mammalia SNORD19 34
  • 68 (a)
(Gallus gallus)
Aves SNORD19 34
  • 62 (a)
(Anolis carolinensis)
Reptilia SNORD19 34
  • 66 (a)
Species where no ortholog for SNORD19 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD19 Gene

Gene Tree for SNORD19 (if available)
Gene Tree for SNORD19 (if available)

Paralogs for SNORD19 Gene

No data available for Paralogs for SNORD19 Gene

Variants for SNORD19 Gene

Sequence variations from dbSNP and Humsavar for SNORD19 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1004621323 -- 52,687,815(+) C/A upstream_transcript_variant
rs1005015433 -- 52,688,538(+) G/T upstream_transcript_variant
rs1008288805 -- 52,689,601(+) A/G downstream_transcript_variant
rs1009364130 -- 52,688,403(+) C/T upstream_transcript_variant
rs1011544527 -- 52,689,025(+) G/T upstream_transcript_variant

Additional Variant Information for SNORD19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD19 Gene

Disorders for SNORD19 Gene

Additional Disease Information for SNORD19

No disorders were found for SNORD19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD19 Gene

Publications for SNORD19 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L … Tomasson MH (The Journal of clinical investigation 2012) 3 58
  3. Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study. (PMID: 22763110) arcOGEN Consortium … Loughlin J (Lancet (London, England) 2012) 3 58
  4. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. (PMID: 21926972) Psychiatric GWAS Consortium Bipolar Disorder Working Group (Nature genetics 2011) 3 58
  5. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD19 Gene

Sources for SNORD19 Gene

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