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Aliases for SNORD18C Gene

Subcategory (RNA class) for SNORD18C Gene


Quality Score for this RNA gene is


Aliases for SNORD18C Gene

  • Small Nucleolar RNA, C/D Box 18C 2 3 5
  • U18C Small Nucleolar RNA 3
  • U18C SnoRNA 3
  • U18C 3

External Ids for SNORD18C Gene

ORGUL Members for SNORD18C Gene

Previous GeneCards Identifiers for SNORD18C Gene

  • GC15M064589
  • GC15M066793
  • GC15M043629

Summaries for SNORD18C Gene

GeneCards Summary for SNORD18C Gene

SNORD18C (Small Nucleolar RNA, C/D Box 18C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD18C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD18C Gene

Genomics for SNORD18C Gene

GeneHancer (GH) Regulatory Elements for SNORD18C Gene

Promoters and enhancers for SNORD18C Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I066500 Enhancer 0.3 ENCODE 550.8 -0.1 -88 0.8 POLR2A ENSG00000280554 GC15M066499 GC15M066533 GC15M066534 GC15M066535 GC15M066537 PIR57266 SNORD16 SNORD18A SNORD18B
GH15I066400 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.5 +97.7 97657 6.9 HDGF SIN3A BMI1 IRF4 ETS1 ZNF366 SCRT2 ETV6 IKZF2 RUNX3 TIPIN DIS3L SNAPC5 RPL4 SNORD16 SNORD18A SNORD18B SNORD18C ZWILCH GC15M066416
GH15I066408 Enhancer 1.1 FANTOM5 Ensembl dbSUPER 10.4 +92.4 92417 1 PKNOX1 SP5 HLF MAFG NFIL3 ZFHX2 MAFF ZNF316 IKZF1 ZNF600 SNAPC5 SNORD16 SNORD18A SNORD18B SNORD18C ZWILCH RPL4 DIS3L MAP2K1 LOC105370868
GH15I066452 Enhancer 1 Ensembl ENCODE 10.4 +48.1 48066 1.5 FOXA2 ZSCAN9 RAD21 RARA CREM THAP11 MIXL1 RXRA CEBPB PPARG MAP2K1 SNORD16 SNORD18B SNORD18C SNORD18A ZWILCH TIPIN ENSG00000261351 LOC105370868 RPL35AP32
GH15I066480 Enhancer 0.8 ENCODE 11.4 +20.1 20121 1.7 HDAC1 ARNT TCF12 GATA2 E2F8 NCOA1 ZEB2 ZNF592 NFIC SMARCA4 DIS3L SNORD16 SNORD18A ZWILCH SNORD18B SNORD18C RPL4 MAP2K1 TIPIN ENSG00000261351
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD18C on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD18C gene promoter:

Genomic Locations for SNORD18C Gene

Genomic Locations for SNORD18C Gene
69 bases
Minus strand

Genomic View for SNORD18C Gene

Genes around SNORD18C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD18C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD18C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD18C Gene

Proteins for SNORD18C Gene

Post-translational modifications for SNORD18C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD18C Gene

Domains & Families for SNORD18C Gene

Gene Families for SNORD18C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD18C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD18C Gene

Function for SNORD18C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD18C Gene

Localization for SNORD18C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD18C Gene

Pathways & Interactions for SNORD18C Gene

SuperPathways for SNORD18C Gene

No Data Available

Interacting Proteins for SNORD18C Gene

Gene Ontology (GO) - Biological Process for SNORD18C Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD18C Gene

Drugs & Compounds for SNORD18C Gene

No Compound Related Data Available

Transcripts for SNORD18C Gene

mRNA/cDNA for SNORD18C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD18C Gene

No ASD Table

Relevant External Links for SNORD18C Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD18C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD18C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD18C Gene:

genes like me logo Genes that share expression patterns with SNORD18C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD18C Gene

Orthologs for SNORD18C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD18C Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD18 34
  • 99 (a)
(Bos Taurus)
Mammalia SNORD18 34
  • 90 (a)
(Canis familiaris)
Mammalia SNORD18 34
  • 86 (a)
(Monodelphis domestica)
Mammalia SNORD18 34
  • 86 (a)
(Mus musculus)
Mammalia Gm22455 34
  • 83 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD18 34
  • 79 (a)
(Gallus gallus)
Aves SNORD18 34 34
  • 85 (a)
(Anolis carolinensis)
Reptilia SNORD18 34
  • 82 (a)
(Danio rerio)
Actinopterygii SNORD18 34
  • 69 (a)
sea squirt
(Ciona savignyi)
Ascidiacea SNORD18 34 34 34 34
  • 70 (a)
Species where no ortholog for SNORD18C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD18C Gene

Gene Tree for SNORD18C (if available)
Gene Tree for SNORD18C (if available)

Paralogs for SNORD18C Gene

No data available for Paralogs for SNORD18C Gene

Variants for SNORD18C Gene

Sequence variations from dbSNP and Humsavar for SNORD18C Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000194503 -- 66,500,899(-) T/C downstream_transcript_variant
rs1000707260 -- 66,501,605(-) T/G upstream_transcript_variant
rs1000796328 -- 66,502,173(-) A/T upstream_transcript_variant
rs1004758338 -- 66,502,651(-) G/A/C upstream_transcript_variant
rs1008154406 -- 66,502,307(-) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD18C Gene

Variant ID Type Subtype PubMed ID
nsv974591 CNV duplication 23825009

Additional Variant Information for SNORD18C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD18C Gene

Disorders for SNORD18C Gene

Additional Disease Information for SNORD18C

No disorders were found for SNORD18C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD18C Gene

Publications for SNORD18C Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Two different snoRNAs are encoded in introns of amphibian and human L1 ribosomal protein genes. (PMID: 7507233) Prislei S … Bozzoni I (Nucleic acids research 1993) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M … Kenmochi N (Genome research 2002) 3 58
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SNORD18C Gene

Sources for SNORD18C Gene

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