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Aliases for SNORD18B Gene

Subcategory (RNA class) for SNORD18B Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD18B Gene

  • Small Nucleolar RNA, C/D Box 18B 2 3 5
  • U18B Small Nucleolar RNA 3
  • U18B SnoRNA 3
  • U18B 3

External Ids for SNORD18B Gene

ORGUL Members for SNORD18B Gene

Previous GeneCards Identifiers for SNORD18B Gene

  • GC15M064590
  • GC15M066794
  • GC15M043630

Summaries for SNORD18B Gene

GeneCards Summary for SNORD18B Gene

SNORD18B (Small Nucleolar RNA, C/D Box 18B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD18B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD18B Gene

Genomics for SNORD18B Gene

GeneHancer (GH) Regulatory Elements for SNORD18B Gene

Promoters and enhancers for SNORD18B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J066500 Enhancer 0.4 ENCODE 650.7 +0.7 685 0.8 POLR2A MAFK ENSG00000280554 GC15M066499 GC15M066537 GC15M066538 GC15M066539 GC15M066541 SNORD16 SNORD18A SNORD18B SNORD18C
GH15J066400 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.5 +98.4 98430 6.9 HDGF SIN3A BMI1 IRF4 ETS1 ZNF366 SCRT2 ETV6 IKZF2 RUNX3 TIPIN DIS3L SNAPC5 RPL4 SNORD16 SNORD18A SNORD18B SNORD18C ZWILCH GC15M066416
GH15J066408 Enhancer 1.1 FANTOM5 Ensembl dbSUPER 10.4 +93.2 93190 1 PKNOX1 SP5 HLF MAFG NFIL3 ZFHX2 MAFF ZNF316 IKZF1 ZNF600 SNAPC5 SNORD16 SNORD18A SNORD18B SNORD18C ZWILCH RPL4 DIS3L MAP2K1 LOC105370868
GH15J066452 Enhancer 1 Ensembl ENCODE 10.4 +48.8 48839 1.5 FOXA2 ZSCAN9 RAD21 RARA CREM THAP11 MIXL1 NFKBIZ RXRA CEBPB MAP2K1 SNORD16 SNORD18B SNORD18C ZWILCH SNORD18A TIPIN ENSG00000261351 LOC105370868 RPL35AP32
GH15J066480 Enhancer 0.8 ENCODE 11.4 +20.9 20894 1.7 HDAC1 ARNT TCF12 GATA2 E2F8 NCOA1 ZEB2 ZNF592 NFIC SMARCA4 DIS3L ZWILCH SNORD16 SNORD18A SNORD18B SNORD18C RPL4 MAP2K1 TIPIN ENSG00000261351
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD18B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD18B gene promoter:
  • TBP
  • TFIID
  • Meis-1a
  • Meis-1b
  • Meis-1
  • FOXF2

Genomic Locations for SNORD18B Gene

Genomic Locations for SNORD18B Gene
chr15:66,502,020-66,502,091
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr15:66,794,358-66,794,429
(GRCh37/hg19)
Size:
72 bases
Orientation:
Minus strand

Genomic View for SNORD18B Gene

Genes around SNORD18B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD18B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD18B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD18B Gene

Proteins for SNORD18B Gene

Post-translational modifications for SNORD18B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD18B Gene

Domains & Families for SNORD18B Gene

Gene Families for SNORD18B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD18B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD18B Gene

Function for SNORD18B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD18B Gene

Localization for SNORD18B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD18B Gene

Pathways & Interactions for SNORD18B Gene

SuperPathways for SNORD18B Gene

No Data Available

Interacting Proteins for SNORD18B Gene

Gene Ontology (GO) - Biological Process for SNORD18B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD18B Gene

Drugs & Compounds for SNORD18B Gene

No Compound Related Data Available

Transcripts for SNORD18B Gene

mRNA/cDNA for SNORD18B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD18B Gene

No ASD Table

Relevant External Links for SNORD18B Gene

GeneLoc Exon Structure for
SNORD18B
ECgene alternative splicing isoforms for
SNORD18B

Expression for SNORD18B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD18B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD18B Gene:

SNORD18B
genes like me logo Genes that share expression patterns with SNORD18B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD18B Gene

Orthologs for SNORD18B Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD18B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD18 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD18 34
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD18 34
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD18 34
  • 85 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD18 34
  • 81 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD18 34
  • 75 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea SNORD18 34 34 34 34
  • 70 (a)
ManyToMany
Species where no ortholog for SNORD18B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD18B Gene

ENSEMBL:
Gene Tree for SNORD18B (if available)
TreeFam:
Gene Tree for SNORD18B (if available)

Paralogs for SNORD18B Gene

No data available for Paralogs for SNORD18B Gene

Variants for SNORD18B Gene

Sequence variations from dbSNP and Humsavar for SNORD18B Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000408247 -- 66,503,846(-) A/C upstream_transcript_variant
rs1000707260 -- 66,501,605(-) T/G downstream_transcript_variant
rs1000796328 -- 66,502,173(-) A/T upstream_transcript_variant
rs1004258910 -- 66,503,376(-) C/A upstream_transcript_variant
rs1004758338 -- 66,502,651(-) G/A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD18B Gene

Variant ID Type Subtype PubMed ID
nsv974591 CNV duplication 23825009

Additional Variant Information for SNORD18B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD18B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD18B Gene

Disorders for SNORD18B Gene

Additional Disease Information for SNORD18B

No disorders were found for SNORD18B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD18B Gene

Publications for SNORD18B Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Two different snoRNAs are encoded in introns of amphibian and human L1 ribosomal protein genes. (PMID: 7507233) Prislei S … Bozzoni I (Nucleic acids research 1993) 2 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  5. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M … Kenmochi N (Genome research 2002) 3 58

Products for SNORD18B Gene

Sources for SNORD18B Gene

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