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Aliases for SNORD18A Gene

Subcategory (RNA class) for SNORD18A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD18A Gene

  • Small Nucleolar RNA, C/D Box 18A 2 3 5
  • U18A Small Nucleolar RNA 3
  • U18A SnoRNA 3
  • U18A 3

External Ids for SNORD18A Gene

ORGUL Members for SNORD18A Gene

Previous GeneCards Identifiers for SNORD18A Gene

  • GC15M064592
  • GC15M066796
  • GC15M043632
  • GC15M066799
  • GC15M066803
  • GC15M066816
  • GC15M066824
  • GC15M066504
  • GC15M066506
  • GC15M066510
  • GC15M066514
  • GC15M066518
  • GC15M066522
  • GC15M066526

Summaries for SNORD18A Gene

GeneCards Summary for SNORD18A Gene

SNORD18A (Small Nucleolar RNA, C/D Box 18A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD18A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD18A Gene

Genomics for SNORD18A Gene

GeneHancer (GH) Regulatory Elements for SNORD18A Gene

Promoters and enhancers for SNORD18A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I066502 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.9 -932 4.3 ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 ZC3H11A SNORD16 ZWILCH RPL4 GC15M066535 GC15M066537 PIR57266 SNORD18A INTS14 ENSG00000260773 RPL35AP32
GH15I066500 Enhancer 0.3 ENCODE 550.8 +1.9 1908 0.8 POLR2A ENSG00000280554 GC15M066499 GC15M066533 GC15M066534 GC15M066535 GC15M066537 PIR57266 SNORD16 SNORD18A SNORD18B
GH15I066768 Enhancer 1.4 Ensembl ENCODE dbSUPER 9.9 -268.7 -268655 6.2 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B IRF4 ZNF213 RPL4 SNORD16 SNORD18A ZWILCH GC15M066763 ENSG00000274995 SMAD6
GH15I066400 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.5 +99.7 99653 6.9 HDGF SIN3A BMI1 IRF4 ETS1 ZNF366 SCRT2 ETV6 IKZF2 RUNX3 TIPIN DIS3L SNAPC5 RPL4 SNORD16 SNORD18A SNORD18B SNORD18C ZWILCH GC15M066416
GH15I066408 Enhancer 1.1 FANTOM5 Ensembl dbSUPER 10.4 +94.4 94413 1 PKNOX1 SP5 HLF MAFG NFIL3 ZFHX2 MAFF ZNF316 IKZF1 ZNF600 SNAPC5 SNORD16 SNORD18A SNORD18B SNORD18C ZWILCH RPL4 DIS3L MAP2K1 LOC105370868
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD18A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD18A gene promoter:

Genomic Locations for SNORD18A Gene

Genomic Locations for SNORD18A Gene
chr15:66,503,243-66,503,314
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr15:66,795,581-66,795,652
(GRCh37/hg19)

Genomic View for SNORD18A Gene

Genes around SNORD18A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD18A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD18A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD18A Gene

Proteins for SNORD18A Gene

Post-translational modifications for SNORD18A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD18A Gene

Domains & Families for SNORD18A Gene

Gene Families for SNORD18A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD18A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD18A Gene

Function for SNORD18A Gene

Phenotypes From GWAS Catalog for SNORD18A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD18A Gene

Localization for SNORD18A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD18A Gene

Pathways & Interactions for SNORD18A Gene

SuperPathways for SNORD18A Gene

No Data Available

Interacting Proteins for SNORD18A Gene

Gene Ontology (GO) - Biological Process for SNORD18A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD18A Gene

Drugs & Compounds for SNORD18A Gene

No Compound Related Data Available

Transcripts for SNORD18A Gene

mRNA/cDNA for SNORD18A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD18A Gene

No ASD Table

Relevant External Links for SNORD18A Gene

GeneLoc Exon Structure for
SNORD18A
ECgene alternative splicing isoforms for
SNORD18A

Expression for SNORD18A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD18A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD18A Gene:

SNORD18A
genes like me logo Genes that share expression patterns with SNORD18A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD18A Gene

Orthologs for SNORD18A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD18A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD18 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD18 34
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD18 34
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD18 34
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD18 34
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm23344 34
  • 78 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD18 34
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD18 34
  • 75 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD18 34
  • 78 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea SNORD18 34 34 34 34
  • 66 (a)
ManyToMany
Species where no ortholog for SNORD18A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD18A Gene

ENSEMBL:
Gene Tree for SNORD18A (if available)
TreeFam:
Gene Tree for SNORD18A (if available)

Paralogs for SNORD18A Gene

No data available for Paralogs for SNORD18A Gene

Variants for SNORD18A Gene

Sequence variations from dbSNP and Humsavar for SNORD18A Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000408247 -- 66,503,846(-) A/C upstream_transcript_variant
rs1004258910 -- 66,503,376(-) C/A upstream_transcript_variant
rs1004664838 -- 66,504,212(-) T/C upstream_transcript_variant
rs1005037418 -- 66,504,439(-) G/C upstream_transcript_variant
rs1005668809 -- 66,504,546(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD18A Gene

Variant ID Type Subtype PubMed ID
nsv974591 CNV duplication 23825009

Additional Variant Information for SNORD18A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD18A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD18A Gene

Disorders for SNORD18A Gene

Additional Disease Information for SNORD18A

No disorders were found for SNORD18A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD18A Gene

Publications for SNORD18A Gene

  1. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 2 3 58
  2. Two different snoRNAs are encoded in introns of amphibian and human L1 ribosomal protein genes. (PMID: 7507233) Prislei S … Bozzoni I (Nucleic acids research 1993) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M … Kenmochi N (Genome research 2002) 3 58

Products for SNORD18A Gene

Sources for SNORD18A Gene

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