Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD17 Gene

Subcategory (RNA class) for SNORD17 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD17 Gene

  • Small Nucleolar RNA, C/D Box 17 2 3 5
  • HBI-43 3

External Ids for SNORD17 Gene

ORGUL Members for SNORD17 Gene

Previous GeneCards Identifiers for SNORD17 Gene

  • GC20U900212
  • GC20M017891
  • GC20M017943
  • GC20M017906

Summaries for SNORD17 Gene

GeneCards Summary for SNORD17 Gene

SNORD17 (Small Nucleolar RNA, C/D Box 17) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD17 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD17 Gene

Genomics for SNORD17 Gene

GeneHancer (GH) Regulatory Elements for SNORD17 Gene

Promoters and enhancers for SNORD17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I017954 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 573.2 -1.8 -1756 19.8 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 MGME1 SNORD17 SNX5 PIR32960 GC20M017968 GC20M017966 LOC100286962 RRBP1 OVOL2
GH20I017992 Enhancer 0.7 ENCODE 17.7 -30.2 -30215 1.4 PKNOX1 FOXA2 JUN EBF1 BATF NFATC1 ATF7 NR2F6 HOMEZ IKZF2 PIR51456 MGME1 SNORD17 SNX5 RRBP1 PTMAP3 OVOL2
GH20I017996 Enhancer 1 Ensembl ENCODE 11.9 -33.4 -33355 0.6 ELF3 RB1 NFIB ARID4B RAD21 ZNF335 ELK1 ZNF143 RUNX3 THAP11 MGME1 SNX5 SNORD17 RRBP1 ENSG00000229262 OVOL2 PIR51456 PTMAP3
GH20I017935 Enhancer 1.4 FANTOM5 Ensembl ENCODE 5.9 +24.6 24590 5 ZFP64 ARID4B SIN3A ZNF2 ZNF48 TCF12 ZNF766 ARID2 ZNF207 ZNF143 MGME1 LOC100286962 SNORD17 GC20M017941 GC20M017942 LOC105372549
GH20I017991 Enhancer 0.6 ENCODE 11.9 -29.1 -29101 0.4 FOXA2 ZBED1 EBF1 DPF2 ATF2 IKZF1 NFATC1 ATF7 RUNX3 IKZF2 PIR51456 MGME1 SNX5 SNORD17 RRBP1 OVOL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD17 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD17 gene promoter:

Genomic Locations for SNORD17 Gene

Genomic Locations for SNORD17 Gene
chr20:17,962,710-17,962,946
(GRCh38/hg38)
Size:
237 bases
Orientation:
Minus strand
chr20:17,943,353-17,943,589
(GRCh37/hg19)

Genomic View for SNORD17 Gene

Genes around SNORD17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD17 Gene

Proteins for SNORD17 Gene

Post-translational modifications for SNORD17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD17 Gene

Domains & Families for SNORD17 Gene

Gene Families for SNORD17 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD17: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD17 Gene

Function for SNORD17 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD17 Gene

Localization for SNORD17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD17 Gene

Pathways & Interactions for SNORD17 Gene

SuperPathways for SNORD17 Gene

No Data Available

Interacting Proteins for SNORD17 Gene

Gene Ontology (GO) - Biological Process for SNORD17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD17 Gene

Drugs & Compounds for SNORD17 Gene

No Compound Related Data Available

Transcripts for SNORD17 Gene

mRNA/cDNA for SNORD17 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD17 Gene

Small nucleolar RNA, C/D box 17:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD17 Gene

No ASD Table

Relevant External Links for SNORD17 Gene

GeneLoc Exon Structure for
SNORD17
ECgene alternative splicing isoforms for
SNORD17

Expression for SNORD17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD17 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD17 Gene:

SNORD17

SOURCE GeneReport for Unigene cluster for SNORD17 Gene:

Hs.680747
genes like me logo Genes that share expression patterns with SNORD17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD17 Gene

Orthologs for SNORD17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD17 34
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD17 34
  • 89 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD17 34
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord17 34
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD17 34 34 34
  • 69 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD17 34
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD17 34 34
  • 66 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD17 34
  • 61 (a)
OneToOne
Species where no ortholog for SNORD17 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD17 Gene

ENSEMBL:
Gene Tree for SNORD17 (if available)
TreeFam:
Gene Tree for SNORD17 (if available)

Paralogs for SNORD17 Gene

No data available for Paralogs for SNORD17 Gene

Variants for SNORD17 Gene

Sequence variations from dbSNP and Humsavar for SNORD17 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000271693 -- 17,963,724(-) T/C upstream_transcript_variant
rs1001787740 -- 17,964,113(-) T/C upstream_transcript_variant
rs1001938277 -- 17,964,481(-) T/C upstream_transcript_variant
rs1004765675 -- 17,963,340(-) C/A upstream_transcript_variant
rs1006063611 -- 17,964,836(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD17 Gene

Variant ID Type Subtype PubMed ID
nsv458944 CNV gain 19166990
nsv470543 CNV gain 18288195

Additional Variant Information for SNORD17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD17 Gene

Disorders for SNORD17 Gene

Additional Disease Information for SNORD17

No disorders were found for SNORD17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD17 Gene

Publications for SNORD17 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SNORD17 Gene

Sources for SNORD17 Gene

Content
Loading form....