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Aliases for SNORD16 Gene

Subcategory (RNA class) for SNORD16 Gene


Quality Score for this RNA gene is


Aliases for SNORD16 Gene

  • Small Nucleolar RNA, C/D Box 16 2 3 5
  • U16 Small Nucleolar RNA 3
  • U16 SnoRNA 3
  • U16 3

External Ids for SNORD16 Gene

ORGUL Members for SNORD16 Gene

Previous GeneCards Identifiers for SNORD16 Gene

  • GC15M064591
  • GC15M066795
  • GC15M043631
  • GC15M066503
  • GC15M066505
  • GC15M066508
  • GC15M066513
  • GC15M066517
  • GC15M066521
  • GC15M066525
  • GC15M066529

Summaries for SNORD16 Gene

GeneCards Summary for SNORD16 Gene

SNORD16 (Small Nucleolar RNA, C/D Box 16) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD16 Gene

Genomics for SNORD16 Gene

GeneHancer (GH) Regulatory Elements for SNORD16 Gene

Promoters and enhancers for SNORD16 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J066502 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 690 -1.3 -1336 4.3 ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 ZC3H11A SNORD16 ZWILCH RPL4 GC15M066539 GC15M066541 SNORD18A PIR57266 INTS14 ENSG00000260773 RPL35AP32
GH15J066500 Enhancer 0.4 ENCODE 650.7 +1.5 1504 0.8 POLR2A MAFK GC15M066499 GC15M066537 GC15M066538 GC15M066539 GC15M066541 SNORD16 SNORD18A PIR57266 SNORD18C SNORD18B
GH15J065609 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 73.4 +891.5 891498 3.8 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 INTS14 SLC24A1 ENSG00000260773 PARP16 SNORD16 RPL35AP32 PDCD7 ENSG00000264937 ENSG00000259635 TIPIN
GH15J065515 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 30.2 +986.1 986109 3.6 ZFP64 YBX1 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 DPP8 INTS14 ENSG00000260773 PARP16 SNORD16 SLC24A1 ENSG00000264937 MTFMT PDCD7 RNU5B-1
GH15J065786 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 19.4 +712.8 712791 7.7 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 DENND4A PARP16 INTS14 SLC24A1 ENSG00000260773 PDCD7 SNORD16 RPL35AP32 ZWILCH MTFMT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD16 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD16 gene promoter:
  • TBP
  • Meis-1a
  • Meis-1b
  • Meis-1
  • FOXF2

Genomic Locations for SNORD16 Gene

Genomic Locations for SNORD16 Gene
100 bases
Minus strand
100 bases
Minus strand

Genomic View for SNORD16 Gene

Genes around SNORD16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD16 Gene

Proteins for SNORD16 Gene

Post-translational modifications for SNORD16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD16 Gene

Domains & Families for SNORD16 Gene

Gene Families for SNORD16 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD16: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD16 Gene

Function for SNORD16 Gene

Phenotypes From GWAS Catalog for SNORD16 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD16 Gene

Localization for SNORD16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD16 Gene

Pathways & Interactions for SNORD16 Gene

SuperPathways for SNORD16 Gene

No Data Available

Interacting Proteins for SNORD16 Gene

Gene Ontology (GO) - Biological Process for SNORD16 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD16 Gene

Drugs & Compounds for SNORD16 Gene

No Compound Related Data Available

Transcripts for SNORD16 Gene

mRNA/cDNA for SNORD16 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for SNORD16 Gene

Small nucleolar RNA, C/D box 16:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD16 Gene

No ASD Table

Relevant External Links for SNORD16 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD16 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD16 Gene:


SOURCE GeneReport for Unigene cluster for SNORD16 Gene:

genes like me logo Genes that share expression patterns with SNORD16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD16 Gene

Orthologs for SNORD16 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD16 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD16 34
  • 100 (a)
(Canis familiaris)
Mammalia SNORD16 34
  • 98 (a)
(Mus musculus)
Mammalia Snord16a 34
  • 94 (a)
(Bos Taurus)
Mammalia SNORD16 34
  • 92 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD16 34
  • 90 (a)
(Monodelphis domestica)
Mammalia SNORD16 34
  • 88 (a)
(Gallus gallus)
Aves SNORD16 34
  • 88 (a)
(Anolis carolinensis)
Reptilia SNORD16 34
  • 81 (a)
(Danio rerio)
Actinopterygii SNORD16 34
  • 80 (a)
sea squirt
(Ciona savignyi)
Ascidiacea SNORD16 34
  • 68 (a)
Species where no ortholog for SNORD16 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD16 Gene

Gene Tree for SNORD16 (if available)
Gene Tree for SNORD16 (if available)

Paralogs for SNORD16 Gene

No data available for Paralogs for SNORD16 Gene

Variants for SNORD16 Gene

Sequence variations from dbSNP and Humsavar for SNORD16 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000408247 -- 66,503,846(-) A/C upstream_transcript_variant
rs1004258910 -- 66,503,376(-) C/A upstream_transcript_variant
rs1004664838 -- 66,504,212(-) T/C upstream_transcript_variant
rs1004758338 -- 66,502,651(-) G/A/C downstream_transcript_variant
rs1005037418 -- 66,504,439(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD16 Gene

Variant ID Type Subtype PubMed ID
nsv974591 CNV duplication 23825009

Additional Variant Information for SNORD16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD16 Gene

Disorders for SNORD16 Gene

Additional Disease Information for SNORD16

No disorders were found for SNORD16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD16 Gene

Publications for SNORD16 Gene

  1. A novel small nucleolar RNA (U16) is encoded inside a ribosomal protein intron and originates by processing of the pre-mRNA. (PMID: 8335006) Fragapane P … Bozzoni I (The EMBO journal 1993) 2 3 58
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M … Kenmochi N (Genome research 2002) 3 58
  5. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 3 58

Products for SNORD16 Gene

Sources for SNORD16 Gene

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