Aliases for SNORD16 Gene

Subcategory (RNA class) for SNORD16 Gene

snoRNA

Number of RNA Genes sources:

3 / 14

Aliases for SNORD16 Gene

  • Small Nucleolar RNA, C/D Box 16 2 3 5
  • SNORD16 2 174
  • U16 Small Nucleolar RNA 3
  • U16 SnoRNA 3
  • RF00138 172
  • U16 3

External Ids for SNORD16 Gene

Previous GeneCards Identifiers for SNORD16 Gene

  • GC15M064591
  • GC15M066795
  • GC15M043631
  • GC15M066503
  • GC15M066505
  • GC15M066541
  • GC15M066545
  • GC15M066552
  • GC15M066508
  • GC15M066513
  • GC15M066517
  • GC15M066521
  • GC15M066525
  • GC15M066529
  • GC15M066533
  • GC15M066537

Summaries for SNORD16 Gene

GeneCards Summary for SNORD16 Gene

SNORD16 (Small Nucleolar RNA, C/D Box 16) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD16 Gene

  • Small nucleolar RNA SNORD16

Additional gene information for SNORD16 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD16 Gene

Genomics for SNORD16 Gene

GeneHancer (GH) Regulatory Elements for SNORD16 Gene

Promoters and enhancers for SNORD16 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD16 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD16 gene promoter:
  • FOXF2
  • Meis-1
  • Meis-1a
  • Meis-1b
  • TBP
  • TFIID

Genomic Locations for SNORD16 Gene

Genomic Locations for SNORD16 Gene
chr15:66,502,811-66,502,911
(GRCh38/hg38)
Size:
101 bases
Orientation:
Minus strand
chr15:66,795,149-66,795,248
(GRCh37/hg19)
Size:
100 bases
Orientation:
Minus strand

Genomic View for SNORD16 Gene

Genes around SNORD16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD16 Gene

Proteins for SNORD16 Gene

Post-translational modifications for SNORD16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD16 Gene

Domains & Families for SNORD16 Gene

Gene Families for SNORD16 Gene

genes like me logo Genes that share domains with SNORD16: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD16 Gene

Function for SNORD16 Gene

Phenotypes From GWAS Catalog for SNORD16 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD16 Gene

Localization for SNORD16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD16 Gene

Pathways & Interactions for SNORD16 Gene

PathCards logo

SuperPathways for SNORD16 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORD16 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD16 Gene

Drugs & Compounds for SNORD16 Gene

No Compound Related Data Available

Transcripts for SNORD16 Gene

mRNA/cDNA for SNORD16 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD16 Gene

No ASD Table

Relevant External Links for SNORD16 Gene

GeneLoc Exon Structure for
SNORD16

Expression for SNORD16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD16 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD16

SOURCE GeneReport for Unigene cluster for SNORD16 Gene:

Hs.739034
genes like me logo Genes that share expression patterns with SNORD16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD16 Gene

Orthologs for SNORD16 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD16 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD16 31
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD16 31
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord16a 31
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD16 31
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD16 31
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD16 31
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORD16 31
  • 88 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SNORD16 31
  • 81 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SNORD16 31
  • 80 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea SNORD16 31
  • 68 (a)
OneToOne
Species where no ortholog for SNORD16 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD16 Gene

ENSEMBL:
Gene Tree for SNORD16 (if available)
TreeFam:
Gene Tree for SNORD16 (if available)

Paralogs for SNORD16 Gene

No data available for Paralogs for SNORD16 Gene

Variants for SNORD16 Gene

Additional dbSNP identifiers (rs#s) for SNORD16 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD16 Gene

Variant ID Type Subtype PubMed ID
nsv974591 CNV duplication 23825009

Additional Variant Information for SNORD16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD16 Gene

Disorders for SNORD16 Gene

Additional Disease Information for SNORD16

No disorders were found for SNORD16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD16 Gene

Publications for SNORD16 Gene

  1. A novel small nucleolar RNA (U16) is encoded inside a ribosomal protein intron and originates by processing of the pre-mRNA. (PMID: 8335006) Fragapane P … Bozzoni I (The EMBO journal 1993) 2 3 54
  2. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 54
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54
  4. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M … Kenmochi N (Genome research 2002) 3 54
  5. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. (PMID: 8674114) Kiss-László Z … Kiss T (Cell 1996) 3 54

Products for SNORD16 Gene

Sources for SNORD16 Gene