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Aliases for SNORD15A Gene

Subcategory (RNA class) for SNORD15A Gene


Quality Score for this RNA gene is


Aliases for SNORD15A Gene

  • Small Nucleolar RNA, C/D Box 15A 2 3 5
  • RNA, U15a Small Nucleolar 2
  • U15A SnoRNA 3
  • U15A SnRNA 3
  • SnoRNA 3
  • RNU15A 3
  • U15A 3

External Ids for SNORD15A Gene

ORGUL Members for SNORD15A Gene

Previous HGNC Symbols for SNORD15A Gene

  • RNU15A

Previous GeneCards Identifiers for SNORD15A Gene

  • GC11P074792
  • GC11P075111
  • GC11P071408

Summaries for SNORD15A Gene

GeneCards Summary for SNORD15A Gene

SNORD15A (Small Nucleolar RNA, C/D Box 15A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD15A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD15A Gene

Genomics for SNORD15A Gene

GeneHancer (GH) Regulatory Elements for SNORD15A Gene

Promoters and enhancers for SNORD15A Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I075398 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +0.9 901 4.8 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 RPS3 PIR55667 SNORD15A GC11P075412 GC11P075411 GC11P075418 GC11P075414 POLD3 RNF169 KLHL35
GH11I075405 Enhancer 0.4 ENCODE 0.8 +4.0 3991 0.2 POLR2A SCRT2 CREB1 SNORD15B GC11P075416 PIR55667 RPS3 SNORD15A GC11P075412
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD15A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD15A gene promoter:

Genomic Locations for SNORD15A Gene

Genomic Locations for SNORD15A Gene
148 bases
Plus strand

Genomic View for SNORD15A Gene

Genes around SNORD15A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD15A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD15A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD15A Gene

Proteins for SNORD15A Gene

Post-translational modifications for SNORD15A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD15A Gene

Domains & Families for SNORD15A Gene

Gene Families for SNORD15A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD15A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD15A Gene

Function for SNORD15A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD15A Gene

Localization for SNORD15A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD15A Gene

Pathways & Interactions for SNORD15A Gene

SuperPathways for SNORD15A Gene

No Data Available

Interacting Proteins for SNORD15A Gene

Gene Ontology (GO) - Biological Process for SNORD15A Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD15A Gene

Drugs & Compounds for SNORD15A Gene

No Compound Related Data Available

Transcripts for SNORD15A Gene

mRNA/cDNA for SNORD15A Gene

(2) Additional mRNA sequences :
(2409) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORD15A Gene

Small nucleolar RNA, C/D box 15A:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD15A Gene

No ASD Table

Relevant External Links for SNORD15A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD15A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD15A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD15A Gene:


SOURCE GeneReport for Unigene cluster for SNORD15A Gene:

genes like me logo Genes that share expression patterns with SNORD15A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD15A Gene

Orthologs for SNORD15A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD15A Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD15 34
  • 100 (a)
(Bos Taurus)
Mammalia SNORD15 34
  • 81 (a)
(Canis familiaris)
Mammalia SNORD15 34
  • 80 (a)
(Mus musculus)
Mammalia Snord15a 34
  • 80 (a)
(Monodelphis domestica)
Mammalia SNORD15 34
  • 71 (a)
(Gallus gallus)
Aves SNORD15 34
  • 61 (a)
(Anolis carolinensis)
Reptilia SNORD15 34
  • 58 (a)
(Danio rerio)
Actinopterygii SNORD15 34 34 34 34
  • 57 (a)
sea squirt
(Ciona savignyi)
Ascidiacea SNORD15 34 34 34 34
  • 58 (a)
Species where no ortholog for SNORD15A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD15A Gene

Gene Tree for SNORD15A (if available)
Gene Tree for SNORD15A (if available)

Paralogs for SNORD15A Gene

No data available for Paralogs for SNORD15A Gene

Variants for SNORD15A Gene

Sequence variations from dbSNP and Humsavar for SNORD15A Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000054178 -- 75,399,132(+) G/T upstream_transcript_variant
rs1000408533 -- 75,398,795(+) T/C upstream_transcript_variant
rs1001912436 -- 75,399,554(+) G/T upstream_transcript_variant
rs1002914063 -- 75,400,712(+) T/G downstream_transcript_variant
rs1003541292 -- 75,399,472(+) G/T upstream_transcript_variant

Additional Variant Information for SNORD15A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD15A Gene

Disorders for SNORD15A Gene

Additional Disease Information for SNORD15A

No disorders were found for SNORD15A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD15A Gene

Publications for SNORD15A Gene

  1. Mapping of ribosomal protein S3 and internally nested snoRNA U15A gene to human chromosome 11q13.3-q13.5. (PMID: 7789996) Polakiewicz RD … Page DC (Genomics 1995) 2 3 58
  2. A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3. (PMID: 8319909) Tycowski KT … Steitz JA (Genes & development 1993) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for SNORD15A Gene

Sources for SNORD15A Gene

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