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SNORD14C Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 14C

GCID:
GC11M123093
GIFtS:
16
Genes Participants
UDN Logo

Aliases for SNORD14C Gene

Subcategory (RNA class) for SNORD14C Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD14C Gene

  • Small Nucleolar RNA, C/D Box 14C 2 3 5
  • RNA, Small Nucleolar 3
  • SnoRNA 3

External Ids for SNORD14C Gene

ORGUL Members for SNORD14C Gene

Previous GeneCards Identifiers for SNORD14C Gene

  • GC11M122472
  • GC11M122933
  • GC11M122937
  • GC11M118874
  • GC11M122941
  • GC11M122946
  • GC11M122957
  • GC11M122967
  • GC11M122980
  • GC11M123060
  • GC11M123064
  • GC11M123066
  • GC11M123073
  • GC11M123077
  • GC11M123081
  • GC11M123085
  • GC11M123089

Summaries for SNORD14C Gene

GeneCards Summary for SNORD14C Gene

SNORD14C (Small Nucleolar RNA, C/D Box 14C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD14C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD14C Gene

Genomics for SNORD14C Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD14C Gene

Promoters and enhancers for SNORD14C Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J123055 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 -1.7 -1690 10.9 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 SNORD14C PIR53037 PIR56485 LOC101929289 HSPA8 GC11M123100 GC11M123095 ZNF202 CLMP SNORD14E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD14C on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD14C Gene

Genomic Locations for SNORD14C Gene
chr11:123,059,335-123,059,422
(GRCh38/hg38)
Size:
88 bases
Orientation:
Minus strand
chr11:122,930,043-122,930,130
(GRCh37/hg19)
Size:
88 bases
Orientation:
Minus strand

Genomic View for SNORD14C Gene

Genes around SNORD14C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD14C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD14C Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD14C Gene

Proteins for SNORD14C Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD14C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD14C Gene

Domains & Families for SNORD14C Gene

Gene Families for SNORD14C Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD14C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD14C Gene

Function for SNORD14C Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD14C Gene

Localization for SNORD14C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD14C Gene

Pathways & Interactions for SNORD14C Gene

SuperPathways for SNORD14C Gene

PathCards logo More details on SuperPathways for SNORD14C
No Data Available

Interacting Proteins for SNORD14C Gene

Gene Ontology (GO) - Biological Process for SNORD14C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD14C Gene

Drugs & Compounds for SNORD14C Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD14C Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD14C Gene

(2778) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD14C Gene

No ASD Table

Relevant External Links for SNORD14C Gene

GeneLoc Exon Structure for
SNORD14C
ECgene alternative splicing isoforms for
SNORD14C

Expression for SNORD14C Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD14C Gene

mRNA expression in normal human tissues for SNORD14C Gene
mRNA expression by BioGPS for SNORD14C GenemRNA expression by GTEx for SNORD14C Gene

mRNA differential expression in normal tissues according to GTEx for SNORD14C Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x4.7) and Brain - Cerebellum (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of SNORD14C Gene:

SNORD14C
genes like me logo Genes that share expression patterns with SNORD14C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD14C Gene

Orthologs for SNORD14C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD14C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD14 34
  • 100 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD14 34
  • 88 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD14 34
  • 88 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD14 34
  • 80 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia SNORD14 34
  • 79 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Snord14c 34
  • 78 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves SNORD14 34
  • 78 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia SNORD14 34
  • 79 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii SNORD14 34
  • 70 (a)
 OneToOne
sea squirt
(Ciona savignyi)
 Ascidiacea SNORD14 34
  • 43 (a)
 OneToMany
Species where no ortholog for SNORD14C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD14C Gene

ENSEMBL:
Gene Tree for SNORD14C (if available)
TreeFam:
Gene Tree for SNORD14C (if available)

Paralogs for SNORD14C Gene

No data available for Paralogs for SNORD14C Gene

Variants for SNORD14C Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD14C Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000333769 -- 123,059,644(-) C/T upstream_transcript_variant
rs1001113413 -- 123,061,368(-) T/C upstream_transcript_variant
rs1002888953 -- 123,061,053(-) G/A upstream_transcript_variant
rs1003257093 -- 123,059,809(-) G/A upstream_transcript_variant
rs1007823799 -- 123,060,450(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD14C Gene

Variant ID Type Subtype PubMed ID
nsv1039284 CNV gain 25217958
nsv983069 CNV duplication 23825009

Additional Variant Information for SNORD14C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD14C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD14C Gene

Disorders for SNORD14C Gene

Additional Disease Information for SNORD14C

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD14C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD14C Gene

Publications for SNORD14C Gene

  1. Mouse U14 snRNA is encoded in an intron of the mouse cognate hsc70 heat shock gene. (PMID: 2251119) Liu J … Maxwell ES (Nucleic acids research 1990) 2 3 58
  2. Structure and expression of a human gene coding for a 71 kd heat shock 'cognate' protein. (PMID: 3037489) Dworniczak B … Mirault ME (Nucleic acids research 1987) 2 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  4. Phylogenetic analysis of the stress-70 protein family. (PMID: 7545947) Rensing SA … Maier UG (Journal of molecular evolution 1994) 3 58

Products for SNORD14C Gene

Sources for SNORD14C Gene

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