SNORD14C Gene (RNA Gene)

Small Nucleolar RNA, C/D Box 14C

GC11M123120
GIFtS:
15
See more...

Aliases for SNORD14C Gene

Subcategory (RNA class) for SNORD14C Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD14C Gene

  • Small Nucleolar RNA, C/D Box 14C 2 3 5
  • SNORD14C 2 5
  • RNA, Small Nucleolar 3
  • AP000926.6 170
  • SNODB540 177
  • RF00016 168
  • SnoRNA 3

External Ids for SNORD14C Gene

Previous GeneCards Identifiers for SNORD14C Gene

  • GC11M122472
  • GC11M122933
  • GC11M122937
  • GC11M118874
  • GC11M122941
  • GC11M122946
  • GC11M122957
  • GC11M122967
  • GC11M122980
  • GC11M123060
  • GC11M123064
  • GC11M123102
  • GC11M123106
  • GC11M123097
  • GC11M123115
  • GC11M123066
  • GC11M123073
  • GC11M123077
  • GC11M123081
  • GC11M123085
  • GC11M123089
  • GC11M123093

Summaries for SNORD14C Gene

GeneCards Summary for SNORD14C Gene

SNORD14C (Small Nucleolar RNA, C/D Box 14C) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD14C include Supraglottis Cancer.

Rfam classification for SNORD14C Gene

  • Small nucleolar RNA SNORD14

Additional gene information for SNORD14C Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD14C Gene

Genomics for SNORD14C Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORD14C Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J123055 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -1.7 -1690 10.9 CEBPG SP1 HNRNPL CREB1 PRDM10 REST RFX1 LEF1 NFKBIZ ZNF692 ENSG00000288061 HSPA8 LOC101929289 SNORD14C lnc-CLMP-3 piR-59038 piR-61486 ZNF202 CLMP JHY
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD14C on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORD14C Gene

Genomic Locations for SNORD14C Gene
chr11:123,059,335-123,059,422
(GRCh38/hg38)
Size:
88 bases
Orientation:
Minus strand
chr11:122,930,043-122,930,130
(GRCh37/hg19)
Size:
88 bases
Orientation:
Minus strand

Genomic View for SNORD14C Gene

Genes around SNORD14C on UCSC Golden Path with GeneCards custom track
SNORD14C in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD14C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD14C Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD14C Gene

Proteins for SNORD14C Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD14C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD14C Gene

Domains & Families for SNORD14C Gene

Gene Families for SNORD14C Gene

HGNC:
genes like me logo Genes that share domains with SNORD14C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD14C Gene

Function for SNORD14C Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SNORD14C Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD14C Gene

Localization for SNORD14C Gene

Gene Ontology (GO) - Cellular Components for SNORD14C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD14C: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD14C Gene

Pathways & Interactions for SNORD14C Gene

PathCards logo

SuperPathways for SNORD14C Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD14C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD14C: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD14C Gene

Drugs & Compounds for SNORD14C Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD14C Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD14C Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000066E3F5_9606 snoRNA 88 6

HGNC: 30352,

RefSeq: NR_001453,

Ensembl: ENST00000365382 (view in UCSC) ,

Rfam: RF00016,

snoDB: SNODB540,

snOPY: Homo_sapiens300755,

SNORD14C in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD14C Gene

No ASD Table

Relevant External Links for SNORD14C Gene

GeneLoc Exon Structure for
SNORD14C

No data available for mRNA/cDNA for SNORD14C Gene

Expression for SNORD14C Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD14C Gene

mRNA expression in normal human tissues for SNORD14C Gene
mRNA expression by BioGPS for SNORD14C GenemRNA expression by GTEx for SNORD14C Gene

mRNA differential expression in normal tissues according to GTEx for SNORD14C Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x4.7) and Brain - Cerebellum (x4.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD14C

genes like me logo Genes that share expression patterns with SNORD14C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD14C Gene

Orthologs for SNORD14C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD14C Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORD14 31
  • 100 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SNORD14 31
  • 88 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia SNORD14 31
  • 88 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD14 31
  • 80 (a)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia SNORD14 31
  • 79 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Snord14c 31
  • 78 (a)
 OneToOne
Chicken
(Gallus gallus)
 Aves SNORD14 31
  • 78 (a)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia SNORD14 31
  • 79 (a)
 OneToOne
Zebrafish
(Danio rerio)
 Actinopterygii SNORD14 31
  • 70 (a)
 OneToOne
Sea Squirt
(Ciona savignyi)
 Ascidiacea SNORD14 31
  • 43 (a)
 OneToMany
Species where no ortholog for SNORD14C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD14C Gene

ENSEMBL:
Gene Tree for SNORD14C (if available)
TreeFam:
Gene Tree for SNORD14C (if available)

Paralogs for SNORD14C Gene

No data available for Paralogs for SNORD14C Gene

Variants for SNORD14C Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for SNORD14C Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD14C Gene

Variant ID Type Subtype PubMed ID
nsv1039284 CNV gain 25217958
nsv983069 CNV duplication 23825009

Additional Variant Information for SNORD14C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD14C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD14C Gene

Disorders for SNORD14C Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD14C Gene - From: DISEASES

Disorder Aliases PubMed IDs
supraglottis cancer
  • ca larynx - supraglottis
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD14C

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with SNORD14C: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD14C Gene

Publications for SNORD14C Gene

  1. Mouse U14 snRNA is encoded in an intron of the mouse cognate hsc70 heat shock gene. (PMID: 2251119) Liu J … Maxwell ES (Nucleic acids research 1990) 2 3
  2. Structure and expression of a human gene coding for a 71 kd heat shock 'cognate' protein. (PMID: 3037489) Dworniczak B … Mirault ME (Nucleic acids research 1987) 2 3
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  4. SIRT7-dependent deacetylation of the U3-55k protein controls pre-rRNA processing. (PMID: 26867678) Chen S … Voit R (Nature communications 2016) 3
  5. Phylogenetic analysis of the stress-70 protein family. (PMID: 7545947) Rensing SA … Maier UG (Journal of molecular evolution 1994) 3

ExternalLinks

View latest publications for SNORD14C gene in Mastermind

Products for SNORD14C Gene

Sources for SNORD14C Gene