Aliases for SNORD13P1 Gene

Aliases for SNORD13P1 Gene

  • Small Nucleolar RNA, C/D Box 13 Pseudogene 1 2 3 5
  • RNA, U13 Small Nuclear Pseudogene 1 2 3
  • U13.32A 2 3
  • U13 2 3
  • SNORD13P1 5
  • RNU13P1 3

External Ids for SNORD13P1 Gene

Previous HGNC Symbols for SNORD13P1 Gene

  • RNU13P1

Previous GeneCards Identifiers for SNORD13P1 Gene

  • GC22M042474
  • GC22U900917
  • GC22M042077
  • GC22M042799
  • GC22M042912
  • GC22M042972
  • GC22M044573
  • GC22M042222
  • GC22M042252
  • GC22M042345
  • GC22M042685

Summaries for SNORD13P1 Gene

GeneCards Summary for SNORD13P1 Gene

SNORD13P1 (Small Nucleolar RNA, C/D Box 13 Pseudogene 1) is a Pseudogene.

Additional gene information for SNORD13P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SNORD13P1 Gene

Genomics for SNORD13P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD13P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J042073 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +1.8 1836 3.1 POLR2A ZNF341 CTCF GATAD2B YY1 ZNF274 NR2F1 RAD21 TAF1 PHETA2 SNODB1561 SNORD13P1 SMDT1 CYP2D6 EP300 ENSG00000232754 EP300-AS1 POLDIP3 XRCC6
GH22J042077 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 0.7 -3.1 -3101 3.9 BRCA1 SP1 HNRNPL CREB1 GATAD2A PRDM10 REST ZNF629 TFE3 RFX1 SMDT1 lnc-NDUFA6-2 CYP2D6 XRCC6 EP300 PHF5A RPL5P34 EP300-AS1 ZC3H7B NDUFA6-DT
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD13P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SNORD13P1 Gene

Genomic Locations for SNORD13P1 Gene
chr22:42,076,058-42,076,161
(GRCh38/hg38)
Size:
104 bases
Orientation:
Minus strand

Genomic View for SNORD13P1 Gene

Genes around SNORD13P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD13P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD13P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD13P1 Gene

Proteins for SNORD13P1 Gene

Post-translational modifications for SNORD13P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD13P1 Gene

Domains & Families for SNORD13P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD13P1 Gene

Function for SNORD13P1 Gene

Phenotypes From GWAS Catalog for SNORD13P1 Gene

Phenotypes for SNORD13P1 Gene

GenomeRNAi human phenotypes for SNORD13P1:
genes like me logo Genes that share phenotypes with SNORD13P1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD13P1 Gene

Localization for SNORD13P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD13P1 Gene

Pathways & Interactions for SNORD13P1 Gene

PathCards logo

SuperPathways for SNORD13P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD13P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD13P1 Gene

Drugs & Compounds for SNORD13P1 Gene

No Compound Related Data Available

Transcripts for SNORD13P1 Gene

mRNA/cDNA for SNORD13P1 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD13P1 Gene

No ASD Table

Relevant External Links for SNORD13P1 Gene

GeneLoc Exon Structure for
SNORD13P1

Expression for SNORD13P1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD13P1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD13P1 Gene

Orthologs for SNORD13P1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD13P1 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia snoU13 31
  • 95 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia snoU13 31
  • 83 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia snoU13 31
  • 79 (a)
ManyToMany
Species where no ortholog for SNORD13P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD13P1 Gene

ENSEMBL:
Gene Tree for SNORD13P1 (if available)
TreeFam:
Gene Tree for SNORD13P1 (if available)

Paralogs for SNORD13P1 Gene

No data available for Paralogs for SNORD13P1 Gene

Variants for SNORD13P1 Gene

Additional Variant Information for SNORD13P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD13P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD13P1 Gene

Disorders for SNORD13P1 Gene

Additional Disease Information for SNORD13P1

No disorders were found for SNORD13P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD13P1 Gene

Publications for SNORD13P1 Gene

  1. Three pseudogenes for human U13 snRNA belong to class III. (PMID: 1748306) Baserga SJ … Steitz JA (Gene 1991) 2 3
  2. PHAX and CRM1 are required sequentially to transport U3 snoRNA to nucleoli. (PMID: 15574332) Boulon S … Bertrand E (Molecular cell 2004) 3

Products for SNORD13P1 Gene

Sources for SNORD13P1 Gene