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Aliases for SNORD139 Gene

Subcategory (RNA class) for SNORD139 Gene

snoRNA

Quality Score for this RNA gene is

2

Aliases for SNORD139 Gene

  • Small Nucleolar RNA, C/D Box 139 2 3
  • RNA, U86 Small Nucleolar 3
  • U82 Small Nucleolar RNA 3
  • U82 SnoRNA 3
  • U86 SnoRNA 3
  • RNU86 3
  • U82 3
  • U86 3

External Ids for SNORD139 Gene

ORGUL Members for SNORD139 Gene

Previous GeneCards Identifiers for SNORD139 Gene

  • GC00U936319
  • GC22M039853
  • GC22M039956
  • GC22M040648
  • GC22M041096
  • GC22M041498

Summaries for SNORD139 Gene

Entrez Gene Summary for SNORD139 Gene

  • Intronic regions of ribosomal protein genes can harbor noncoding small nucleolar RNAs (snoRNAs), like U86, which are generated during pre-mRNA processing. snoRNAs form part of the small nucleolar ribonucleoprotein particles (snoRNPs) involved in pre-rRNA processing and modification. snoRNAs of the box C/D class, like U86, function in 2-prime-O-ribose methylation of rRNAs (Duga et al., 2000 [PubMed 10684968]).[supplied by OMIM, Mar 2008]

GeneCards Summary for SNORD139 Gene

SNORD139 (Small Nucleolar RNA, C/D Box 139) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD139 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD139 Gene

Genomics for SNORD139 Gene

GeneHancer (GH) Regulatory Elements for SNORD139 Gene

Promoters and enhancers for SNORD139 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I039315 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 -1.1 -1100 5.9 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 NFYC ZFP41 SSRP1 RPL3 GC22M042582 PIR31798 SNORD139 SNORD43 GC22M042168 GC22M042100 DDX17 SNORD83B ENSG00000273076
GH22I039316 Enhancer 0.4 ENCODE 550.8 +2.0 1955 0.2 GLIS2 POLR2A PATZ1 GC22M042039 GC22M042137 GC22M042366 GC22M042449 GC22M042589 PIR59759 SNORD139 SNORD83B SNORD83A GC22M042168
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD139 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNORD139 Gene

Genomic Locations for SNORD139 Gene
chr22:39,316,842-39,316,896
(GRCh38/hg38)
Size:
55 bases
Orientation:
Minus strand
chr22:39,712,847-39,712,901
(GRCh37/hg19)

Genomic View for SNORD139 Gene

Genes around SNORD139 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD139 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD139 Gene

Proteins for SNORD139 Gene

Post-translational modifications for SNORD139 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD139 Gene

Domains & Families for SNORD139 Gene

Gene Families for SNORD139 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD139: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD139 Gene

Function for SNORD139 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD139 Gene

Localization for SNORD139 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD139 Gene

Pathways & Interactions for SNORD139 Gene

SuperPathways for SNORD139 Gene

No Data Available

Interacting Proteins for SNORD139 Gene

Gene Ontology (GO) - Biological Process for SNORD139 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD139 Gene

Drugs & Compounds for SNORD139 Gene

No Compound Related Data Available

Transcripts for SNORD139 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD139 Gene

No ASD Table

Relevant External Links for SNORD139 Gene

GeneLoc Exon Structure for
SNORD139
ECgene alternative splicing isoforms for
SNORD139

Expression for SNORD139 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD139 Gene:

SNORD139
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD139 Gene

Orthologs for SNORD139 Gene

No data available for Orthologs and Evolution for SNORD139 Gene

Paralogs for SNORD139 Gene

No data available for Paralogs for SNORD139 Gene

Variants for SNORD139 Gene

Sequence variations from dbSNP and Humsavar for SNORD139 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000428722 -- 39,316,470(-) G/A downstream_transcript_variant
rs1000606715 -- 39,318,835(-) T/C upstream_transcript_variant
rs1000826106 -- 39,317,388(-) C/G upstream_transcript_variant
rs1000933539 -- 39,317,147(-) G/A upstream_transcript_variant
rs1002052109 -- 39,316,707(-) T/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD139 Gene

Variant ID Type Subtype PubMed ID
nsv589033 CNV loss 21841781
nsv834198 CNV loss 17160897

Additional Variant Information for SNORD139 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD139

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD139 Gene

Disorders for SNORD139 Gene

No disorders were found for SNORD139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD139 Gene

Publications for SNORD139 Gene

  1. snoStrip: a snoRNA annotation pipeline. (PMID: 24174566) Bartschat S … Hertel J (Bioinformatics (Oxford, England) 2014) 2 3 58
  2. The intron-containing L3 ribosomal protein gene (RPL3): sequence analysis and identification of U43 and of two novel intronic small nucleolar RNAs. (PMID: 10684968) Duga S … Simonic T (Biochimica et biophysica acta 2000) 3 58

Products for SNORD139 Gene

Sources for SNORD139 Gene

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