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Aliases for SNORD13 Gene

Subcategory (RNA class) for SNORD13 Gene


Quality Score for this RNA gene is


Aliases for SNORD13 Gene

  • Small Nucleolar RNA, C/D Box 13 2 3 5
  • SNORD13A 3
  • RNU13 3
  • U13 3

External Ids for SNORD13 Gene

ORGUL Members for SNORD13 Gene

Previous GeneCards Identifiers for SNORD13 Gene

  • GC08P033370

Summaries for SNORD13 Gene

GeneCards Summary for SNORD13 Gene

SNORD13 (Small Nucleolar RNA, C/D Box 13) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD13 Gene

Genomics for SNORD13 Gene

GeneHancer (GH) Regulatory Elements for SNORD13 Gene

Promoters and enhancers for SNORD13 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I033511 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.8 +0.1 117 3.6 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF548 SP3 TTI2 GC08P033513 SNORD13 FUT10 MAK16 RNF122
GH08I033470 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.7 -41.2 -41172 3.2 PKNOX1 ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 IRF4 YY1 SLC30A9 FUT10 SNORD13 TTI2 LOC100630919 RPL10P18 ENSG00000252505 RNF122 LOC100507379
GH08I033553 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.6 +43.5 43454 7.5 HDGF ELF3 PKNOX1 FOXA2 IRF4 RARA ZNF143 ATF7 ETV6 IKZF2 FUT10 LOC100630919 SNORD13 TTI2 RNF122 GC08P033549 RPL10P18
GH08I033574 Enhancer 0.8 FANTOM5 Ensembl 12 +61.3 61308 0.8 NFATC3 SMAD5 NR4A1 E4F1 MTA3 POLR2B POLR2A MGA SUPT5H FUT10 LOC100630919 SNORD13 TTI2 RPL10P18 ENSG00000252505 MAK16 RNF122 RN7SL621P
GH08I033580 Enhancer 0.8 ENCODE 12 +68.0 68042 1.6 DRAP1 ELF3 SOX13 SAP130 ARID4B DMAP1 ZNF48 ZSCAN9 TEAD3 GATAD1 GC08P033581 RN7SL621P FUT10 LOC100630919 SNORD13 TTI2 RPL10P18 ENSG00000252505 MAK16 RNF122
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD13 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD13 gene promoter:

Genomic Locations for SNORD13 Gene

Genomic Locations for SNORD13 Gene
104 bases
Plus strand

Genomic View for SNORD13 Gene

Genes around SNORD13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD13 Gene

Proteins for SNORD13 Gene

Post-translational modifications for SNORD13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD13 Gene

Domains & Families for SNORD13 Gene

Gene Families for SNORD13 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD13: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD13 Gene

Function for SNORD13 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD13 Gene

Localization for SNORD13 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD13 gene
Compartment Confidence
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD13 Gene

Pathways & Interactions for SNORD13 Gene

SuperPathways for SNORD13 Gene

No Data Available

Interacting Proteins for SNORD13 Gene

Gene Ontology (GO) - Biological Process for SNORD13 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD13 Gene

Drugs & Compounds for SNORD13 Gene

No Compound Related Data Available

Transcripts for SNORD13 Gene

mRNA/cDNA for SNORD13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD13 Gene

No ASD Table

Relevant External Links for SNORD13 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD13 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD13 Gene:

genes like me logo Genes that share expression patterns with SNORD13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD13 Gene

Orthologs for SNORD13 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD13 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia snoU13 34 34
  • 98 (a)
Species where no ortholog for SNORD13 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD13 Gene

Gene Tree for SNORD13 (if available)
Gene Tree for SNORD13 (if available)

Paralogs for SNORD13 Gene

No data available for Paralogs for SNORD13 Gene

Variants for SNORD13 Gene

Sequence variations from dbSNP and Humsavar for SNORD13 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs186443359 likely-benign, not provided 33,512,033(+) C/G upstream_transcript_variant
rs780348831 likely-benign, not specified 33,512,446(+) A/G upstream_transcript_variant
rs930230508 uncertain-significance, not specified 33,512,516(+) A/C upstream_transcript_variant
rs78781527 benign, not specified 33,512,496(+) G/A/C upstream_transcript_variant
rs1001484175 -- 33,514,047(+) T/A/C downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD13 Gene

Variant ID Type Subtype PubMed ID
nsv6146 CNV deletion 18451855

Additional Variant Information for SNORD13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD13 Gene

Disorders for SNORD13 Gene

Additional Disease Information for SNORD13

No disorders were found for SNORD13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD13 Gene

Publications for SNORD13 Gene

  1. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. (PMID: 2531075) Tyc K … Steitz JA (The EMBO journal 1989) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. Processing of mammalian rRNA precursors at the 3' end of 18S rRNA. Identification of cis-acting signals suggests the involvement of U13 small nucleolar RNA. (PMID: 8973634) Cavaillé J … Bachellerie JP (European journal of biochemistry 1996) 3 58
  4. Novel intron-encoded small nucleolar RNAs with long sequence complementarities to mature rRNAs involved in ribosome biogenesis. (PMID: 8721999) Bachellerie JP … Renalier MH (Biochemistry and cell biology = Biochimie et biologie cellulaire 1995) 3 58
  5. The numerous modified nucleotides in eukaryotic ribosomal RNA. (PMID: 2247610) Maden BE (Progress in nucleic acid research and molecular biology 1990) 3 58

Products for SNORD13 Gene

Sources for SNORD13 Gene

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