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SNORD12C Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 12C

GCID:
GC20P049309
GIFtS:
16
Genes Participants
UDN Logo

Aliases for SNORD12C Gene

Subcategory (RNA class) for SNORD12C Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD12C Gene

  • Small Nucleolar RNA, C/D Box 12C 2 3 5
  • Small Nucleolar RNA, C/D Box 106 2 3
  • RNA, U106 Small Nucleolar 2 3
  • SNORD106 3
  • RNU106 3
  • E2-1 3
  • U106 3
  • E3 3
  • E2 3

External Ids for SNORD12C Gene

ORGUL Members for SNORD12C Gene

Previous HGNC Symbols for SNORD12C Gene

  • RNU106
  • SNORD106

Previous GeneCards Identifiers for SNORD12C Gene

  • GC20U900298
  • GC20P047347
  • GC20P047895
  • GC20P044645
  • GC20P049282
  • GC20P049286
  • GC20P049287
  • GC20P049291
  • GC20P049295
  • GC20P049299
  • GC20P049304

Summaries for SNORD12C Gene

GeneCards Summary for SNORD12C Gene

SNORD12C (Small Nucleolar RNA, C/D Box 12C) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD12C Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD12C Gene

Genomics for SNORD12C Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD12C Gene

Promoters and enhancers for SNORD12C Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20I049275 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.0 1015 9.2 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 ZNFX1 SNORD12B ZFAS1 SNORD12 ENSG00000274760 ENSG00000277830 ENSG00000277967 GC20P049313 GC20P049317 GC20P049318
GH20I049236 Enhancer 0.3 ENCODE 12.2 -41.3 -41281 1.4 EZH2 CSE1L SNORD12 SNORD12B SNORD12C ZFAS1 ZNFX1 STAU1 PIR41098 DDX27
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD12C on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD12C gene promoter:

Genomic Locations for SNORD12C Gene

Genomic Locations for SNORD12C Gene
chr20:49,278,940-49,279,028
(GRCh38/hg38)
Size:
89 bases
Orientation:
Plus strand
chr20:47,895,477-47,895,565
(GRCh37/hg19)

Genomic View for SNORD12C Gene

Genes around SNORD12C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD12C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD12C Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD12C Gene

Proteins for SNORD12C Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD12C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD12C Gene

Domains & Families for SNORD12C Gene

Gene Families for SNORD12C Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD12C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD12C Gene

Function for SNORD12C Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

miRNA for SNORD12C Gene

miRTarBase miRNAs that target SNORD12C

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNORD12C Gene

Localization for SNORD12C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD12C Gene

Pathways & Interactions for SNORD12C Gene

SuperPathways for SNORD12C Gene

PathCards logo More details on SuperPathways for SNORD12C
No Data Available

Interacting Proteins for SNORD12C Gene

Gene Ontology (GO) - Biological Process for SNORD12C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD12C Gene

Drugs & Compounds for SNORD12C Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD12C Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD12C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD12C Gene

No ASD Table

Relevant External Links for SNORD12C Gene

GeneLoc Exon Structure for
SNORD12C
ECgene alternative splicing isoforms for
SNORD12C

Expression for SNORD12C Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD12C Gene

mRNA expression in normal human tissues for SNORD12C Gene
mRNA expression by GTEx for SNORD12C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD12C Gene:

SNORD12C
genes like me logo Genes that share expression patterns with SNORD12C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD12C Gene

Orthologs for SNORD12C Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD12C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD12 34
  • 100 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD12 34
  • 86 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD12 34
  • 83 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Gm25878 34
  • 81 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia SNORD12 34
  • 80 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD12 34
  • 76 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves SNORD12 34
  • 66 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia SNORD12 34
  • 77 (a)
 ManyToMany
zebrafish
(Danio rerio)
 Actinopterygii SNORD12 34
  • 65 (a)
 ManyToMany
Species where no ortholog for SNORD12C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD12C Gene

ENSEMBL:
Gene Tree for SNORD12C (if available)
TreeFam:
Gene Tree for SNORD12C (if available)

Paralogs for SNORD12C Gene

No data available for Paralogs for SNORD12C Gene

Variants for SNORD12C Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD12C Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000042643 -- 49,277,336(+) G/C upstream_transcript_variant
rs1002185967 -- 49,277,949(+) T/G upstream_transcript_variant
rs1003210719 -- 49,279,407(+) C/G/T downstream_transcript_variant
rs1005561704 -- 49,278,901(+) A/C/G upstream_transcript_variant
rs1006142425 -- 49,278,771(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD12C Gene

Variant ID Type Subtype PubMed ID
dgv1248e212 CNV loss 25503493
nsv1064443 CNV gain 25217958
nsv1067146 CNV loss 25217958
nsv437839 CNV loss 16327808

Additional Variant Information for SNORD12C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD12C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD12C Gene

Disorders for SNORD12C Gene

Additional Disease Information for SNORD12C

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD12C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD12C Gene

Publications for SNORD12C Gene

  1. Identification of 13 novel human modification guide RNAs. (PMID: 14602913) Vitali P … Cavaillé J (Nucleic acids research 2003) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. Genes for E1, E2, and E3 small nucleolar RNAs. (PMID: 8415643) Nag MK … Eliceiri GL (Proceedings of the National Academy of Sciences of the United States of America 1993) 3 58

Products for SNORD12C Gene

Sources for SNORD12C Gene

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