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SNORD12C (Small Nucleolar RNA, C/D Box 12C) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD12C include Human Granulocytic Anaplasmosis.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH20J049306 | Enhancer | 0.7 | Ensembl | 12.2 | +28.2 | 28161 | 1 | SOX13 ZHX2 PKNOX1 SMARCA5 CTBP1 ESRRA ZNF217 TEAD1 HCFC1 MBD2 | ZFAS1 SNORD12 SNORD12B ZNFX1 SNORD12C CSE1L lnc-DDX27-4 piR-57133-372 KCNB1 | |
GH20J049236 | Enhancer | 0.3 | ENCODE | 12.2 | -41.3 | -41281 | 1.4 | EZH2 | NONHSAG031974.2 CSE1L ZFAS1 SNORD12 SNORD12B SNORD12C ZNFX1 piR-57461-133 STAU1 DDX27 | |
GH20J049275 | Promoter/Enhancer | 2.6 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.7 | +3.6 | 3565 | 14.3 | CEBPG SP1 HNRNPL CREB1 GATAD2A ATF7 YBX1 PRDM10 ZNF629 REST | ZNFX1 ZFAS1 SNORD12 DDX27 CSE1L SNORD12B B4GALT5 RNF114 ARFGEF2 PTGIS |
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005730 | nucleolus | IEA | -- |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000071403B_9606 | snoRNA | 89 | 4 |
Ensembl: ENST00000386307 (view in UCSC) , Rfam: RF00581, snoDB: SNODB1186, snOPY: Homo_sapiens300491, |
URS0000359B05_9606 | snoRNA | 79 | 4 |
HGNC: 10105, RefSeq: NR_002433, snoDB: SNODB136, ENA: AY349607.1:1..79:ncRNA, |
This gene was present in the common ancestor of chordates.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
Chimpanzee (Pan troglodytes) |
Mammalia | SNORD12 31 |
|
OneToOne | |
Dog (Canis familiaris) |
Mammalia | SNORD12 31 |
|
OneToOne | |
Cow (Bos Taurus) |
Mammalia | SNORD12 31 |
|
OneToOne | |
Mouse (Mus musculus) |
Mammalia | Gm25878 31 |
|
OneToOne | |
Oppossum (Monodelphis domestica) |
Mammalia | SNORD12 31 |
|
OneToOne | |
Platypus (Ornithorhynchus anatinus) |
Mammalia | SNORD12 31 |
|
OneToOne | |
Chicken (Gallus gallus) |
Aves | SNORD12 31 |
|
OneToMany | |
Lizard (Anolis carolinensis) |
Reptilia | SNORD12 31 |
|
ManyToMany | |
Zebrafish (Danio rerio) |
Actinopterygii | SNORD12 31 |
|
ManyToMany |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv1248e212 | CNV | loss | 25503493 |
nsv1064443 | CNV | gain | 25217958 |
nsv1067146 | CNV | loss | 25217958 |
nsv437839 | CNV | loss | 16327808 |
Disorder | Aliases | PubMed IDs |
---|---|---|
human granulocytic anaplasmosis |
|
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