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Aliases for SNORD12B Gene
Subcategory (RNA class) for SNORD12B Gene
snoRNA
Number of RNA Genes sources:
3 / 17
Aliases for SNORD12B Gene
External Ids for SNORD12B Gene
- HGNC: 33573
- Entrez Gene: 100113393
- Ensembl: ENSG00000222365
Previous GeneCards Identifiers for SNORD12B Gene
- GC19U900762
- GC20P047898
- GC20P047904
- GC20P047909
- GC20P047916
- GC20P049283
- GC20P049289
- GC20P049326
- GC20P049327
- GC20P049337
- GC20P049340
- GC20P049293
- GC20P049297
- GC20P049301
- GC20P049307
- GC20P049311
- GC20P049315
- GC20P049319
- GC20P049322
Summaries for SNORD12B Gene
GeneCards Summary for SNORD12B Gene
SNORD12B (Small Nucleolar RNA, C/D Box 12B) is an RNA Gene, and is affiliated with the snoRNA class.
Rfam classification for SNORD12B Gene
-
Small nucleolar SNORD12/SNORD106
Additional gene information for SNORD12B Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD12B Gene
Genomics for SNORD12B Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SNORD12B Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SNORD12B on the GeneHancer Hub at the UCSC Golden Path
- Top Transcription factor binding sites by QIAGEN in the SNORD12B gene promoter:
-
- AML1a
- Bach1
- Egr-2
- HFH-1
- HOXA3
- HTF
- LCR-F1
- NF-kappaB
- NF-kappaB1
- Sp1
Genomic Locations for SNORD12B Gene
Genomic Locations for SNORD12B Gene
- chr20:49,280,313-49,280,415
- (GRCh38/hg38)
- Size:
- 103 bases
- Orientation:
- Plus strand
- chr20:47,896,850-47,896,952
- (GRCh37/hg19)
- Size:
- 103 bases
- Orientation:
- Plus strand
Genomic View for SNORD12B Gene
Genes around SNORD12B on UCSC Golden Path with GeneCards custom track
SNORD12B in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 19p13.2 by HGNC
- 20q13.13 by Entrez Gene
- 20q13.13 by Ensembl
SNORD12B Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SNORD12B Gene
Proteins for SNORD12B Gene
Post-translational modifications for SNORD12B Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD12B
- Origene Custom Protein Services for SNORD12B
No data available for DME Specific Peptides for SNORD12B Gene
Domains & Families for SNORD12B Gene
Gene Families for SNORD12B Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD12B Gene
Function for SNORD12B Gene
Phenotypes From GWAS Catalog for SNORD12B Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORD12B - Select products 50% OFF >
- * SNORD12B CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SNORD12B
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD12B Gene
Localization for SNORD12B Gene
| Compartment | Confidence |
|---|---|
| nucleus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005730 | nucleolus | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD12B Gene
Pathways & Interactions for SNORD12B Gene
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD12B Gene
Transcripts for SNORD12B Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD12B Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000643FAE_9606 | snoRNA | 91 | 4 |
Ensembl: ENST00000410433 (view in UCSC) , Rfam: RF00581, snoDB: SNODB394, snOPY: Homo_sapiens300763, |
| URS000075BC17_9606 | snoRNA | 103 | 3 |
HGNC: 33573, RefSeq: NR_003695, snoDB: SNODB1319, |
SNORD12B in the GeneCards ncRNA compendium hub on the UCSC Golden Path
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SNORD12B - Select products 50% OFF >
- * SNORD12B CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SNORD12B
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for SNORD12B Gene
- GeneLoc Exon Structure for
- SNORD12B
No data available for mRNA/cDNA for SNORD12B Gene
Expression for SNORD12B Gene
mRNA differential expression in normal tissues according to GTEx for SNORD12B Gene
This gene is overexpressed in Whole Blood (x8.4).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD12B
SOURCE GeneReport for Unigene cluster for SNORD12B Gene:
Hs.711216Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD12B Gene
Orthologs for SNORD12B Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | SNORD12 31 |
|
OneToOne | |
| Dog (Canis familiaris) |
Mammalia | SNORD12 31 |
|
OneToOne | |
| Cow (Bos Taurus) |
Mammalia | SNORD12 31 |
|
OneToOne | |
| Oppossum (Monodelphis domestica) |
Mammalia | SNORD12 31 31 |
|
ManyToMany | |
| Mouse (Mus musculus) |
Mammalia | Gm23201 31 |
|
ManyToMany | |
| Gm24123 31 |
|
ManyToMany | |||
| Platypus (Ornithorhynchus anatinus) |
Mammalia | SNORD12 31 31 31 31 31 |
|
ManyToMany | |
| Chicken (Gallus gallus) |
Aves | SNORD12 31 |
|
OneToMany | |
| Lizard (Anolis carolinensis) |
Reptilia | SNORD12 31 |
|
ManyToMany | |
| Zebrafish (Danio rerio) |
Actinopterygii | SNORD12 31 31 31 |
|
ManyToMany |
- Species where no ortholog for SNORD12B was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
Paralogs for SNORD12B Gene
No data available for Paralogs for SNORD12B Gene
Variants for SNORD12B Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1248e212 | CNV | loss | 25503493 |
| nsv1064443 | CNV | gain | 25217958 |
| nsv1067146 | CNV | loss | 25217958 |
| nsv437839 | CNV | loss | 16327808 |
Additional Variant Information for SNORD12B Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SNORD12B
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD12B Gene
Disorders for SNORD12B Gene
Additional Disease Information for SNORD12B
No disorders were found for SNORD12B Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD12B Gene
Publications for SNORD12B Gene
- RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
- Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3
- snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3
ExternalLinks
Products for SNORD12B Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SNORD12B
- Origene Custom Protein Services for SNORD12B
- Browse OriGene Inhibitory RNA Products For SNORD12B
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SNORD12B
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SNORD12B
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SNORD12B
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SNORD12B
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SNORD12B
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SNORD12B
Sources for SNORD12B Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB