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SNORD125 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 125

GCID:
GC22M029334
GIFtS:
15
Genes Participants
UDN Logo

Aliases for SNORD125 Gene

Subcategory (RNA class) for SNORD125 Gene

undefined

Quality Score for this RNA gene is

4

Aliases for SNORD125 Gene

  • Small Nucleolar RNA, C/D Box 125 2 3 5

External Ids for SNORD125 Gene

ORGUL Members for SNORD125 Gene

Previous GeneCards Identifiers for SNORD125 Gene

  • GC22U900386
  • GC22M028059
  • GC22M029729
  • GC22M012693

Summaries for SNORD125 Gene

GeneCards Summary for SNORD125 Gene

SNORD125 (Small Nucleolar RNA, C/D Box 125) is an RNA Gene, and is affiliated with the undefined RNA class.

fRNAdb sequence ontologies for SNORD125 Gene

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

Additional gene information for SNORD125 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD125 Gene

Genomics for SNORD125 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD125 Gene

Promoters and enhancers for SNORD125 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22I029332 Enhancer 0.2 dbSUPER 550.8 +0.1 96 1 MIR3653 SNORD125 GAS2L1 RHBDD3 AP1B1 RASL10A
GH22I029381 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 12.1 -52.1 -52146 8.1 PKNOX1 SMAD1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 SLC30A9 AP1B1 RASL10A SNORD125 ZNRF3 GAS2L1 RHBDD3 LOC102723305 MIR3653
GH22I029368 Enhancer 1.1 FANTOM5 Ensembl ENCODE 11.9 -36.3 -36279 1.3 ZNF266 MAX ZIC2 FOSL1 PRDM10 FOS ZNF362 ZNF189 NRF1 HLF EWSR1 SF3A1 AP1B1 RASL10A SNORD125 TBC1D10A ENSG00000272858 THOC5 NEFH ZNRF3
GH22I029375 Enhancer 0.9 ENCODE dbSUPER 12.2 -43.8 -43761 3.4 NCOA3 NFIB NEUROD1 CEBPG ZNF507 ZNF121 CTBP1 GATA3 FOSL2 RCOR1 AP1B1 RASL10A SNORD125 NIPSNAP1 RHBDD3 LOC102723305 MIR3653
GH22I029276 Enhancer 0.4 dbSUPER 11.7 +55.7 55745 1.8 PAF1 POLR2A GLIS1 GAS2L1 RASL10A SNORD125 AP1B1 C22orf31 EWSR1 RHBDD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD125 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD125 gene promoter:

Genomic Locations for SNORD125 Gene

Genomic Locations for SNORD125 Gene
chr22:29,333,163-29,333,258
(GRCh38/hg38)
Size:
96 bases
Orientation:
Minus strand
chr22:29,729,152-29,729,247
(GRCh37/hg19)

Genomic View for SNORD125 Gene

Genes around SNORD125 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD125 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD125 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD125 Gene

ORGUL Member Location for SNORD125 Gene

ORGUL Member Location for SNORD125 gene

Proteins for SNORD125 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD125 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD125 Gene

Domains & Families for SNORD125 Gene

Gene Families for SNORD125 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD125: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD125 Gene

Function for SNORD125 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD125 Gene

Localization for SNORD125 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD125 Gene

Pathways & Interactions for SNORD125 Gene

SuperPathways for SNORD125 Gene

PathCards logo More details on SuperPathways for SNORD125
No Data Available

Interacting Proteins for SNORD125 Gene

Gene Ontology (GO) - Biological Process for SNORD125 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD125 Gene

Drugs & Compounds for SNORD125 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD125 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD125 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD125 Gene

No ASD Table

Relevant External Links for SNORD125 Gene

GeneLoc Exon Structure for
SNORD125
ECgene alternative splicing isoforms for
SNORD125

Expression for SNORD125 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD125 Gene

mRNA expression in normal human tissues for SNORD125 Gene
mRNA expression by GTEx for SNORD125 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD125 Gene:

SNORD125
genes like me logo Genes that share expression patterns with SNORD125: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD125 Gene

Orthologs for SNORD125 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD125 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD125 34
  • 100 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD125 34
  • 85 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD125 34 34
  • 82 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Gm24958 34
  • 80 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves SNORD125 34
  • 63 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia SNORD125 34
  • 66 (a)
 OneToOne
Species where no ortholog for SNORD125 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD125 Gene

ENSEMBL:
Gene Tree for SNORD125 (if available)
TreeFam:
Gene Tree for SNORD125 (if available)

Paralogs for SNORD125 Gene

No data available for Paralogs for SNORD125 Gene

Variants for SNORD125 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD125 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000132468 -- 29,335,222(-) C/T upstream_transcript_variant
rs1000449335 -- 29,333,866(-) C/A upstream_transcript_variant
rs1000800621 -- 29,333,702(-) G/C upstream_transcript_variant
rs1001127885 -- 29,333,019(-) G/C downstream_transcript_variant
rs1001181841 -- 29,333,217(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD125 Gene

Variant ID Type Subtype PubMed ID
nsv834171 CNV loss 17160897

Additional Variant Information for SNORD125 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD125

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD125 Gene

Disorders for SNORD125 Gene

Additional Disease Information for SNORD125

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD125 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD125 Gene

Publications for SNORD125 Gene

  1. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. (PMID: 25086665) Wolpin BM … Amundadottir LT (Nature genetics 2014) 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  3. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58
  4. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. (PMID: 18089548) Genome Information Integration Project And H-Invitational 2 … Gojobori T (Nucleic acids research 2008) 1
  5. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. (PMID: 15103394) Imanishi T … Sugano S (PLoS biology 2004) 1

Products for SNORD125 Gene

Sources for SNORD125 Gene

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