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Aliases for SNORD123 Gene

Subcategory (RNA class) for SNORD123 Gene


Quality Score for this RNA gene is


Aliases for SNORD123 Gene

  • Small Nucleolar RNA, C/D Box 123 2 3 5

External Ids for SNORD123 Gene

ORGUL Members for SNORD123 Gene

Previous GeneCards Identifiers for SNORD123 Gene

  • GC05U900777
  • GC05P009601
  • GC05P009532

Summaries for SNORD123 Gene

GeneCards Summary for SNORD123 Gene

SNORD123 (Small Nucleolar RNA, C/D Box 123) is an RNA Gene, and is affiliated with the undefined RNA class.

Additional gene information for SNORD123 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD123 Gene

Genomics for SNORD123 Gene

GeneHancer (GH) Regulatory Elements for SNORD123 Gene

Promoters and enhancers for SNORD123 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I009408 Enhancer 0.6 ENCODE 9.8 -138.4 -138369 3.6 FOXA2 RXRA MAX REST RAD21 FOXA1 NR2F2 YY1 JUND ATF3 ENSG00000248537 SEMA5A SNORD123 GC05P009389 ENSG00000279698
GH05I009284 Enhancer 0.4 Ensembl ENCODE 10 -263.7 -263738 1.5 GC05M009285 GC05M009286 SEMA5A SNORD123 GC05P009281 GC05M008903
GH05I009483 Enhancer 0.2 ENCODE 10.3 -65.0 -65045 1.5 SNHG18 SEMA5A SNORD123 ENSG00000272417 ENSG00000279698 GC05P009389
GH05I009557 Enhancer 0.5 ENCODE 0.4 +9.6 9585 1.4 RXRA FOS HNF4A RAD21 FOXA1 SNHG18 SEMA5A SNORD123 LOC101929359
GH05I009552 Enhancer 0.2 ENCODE 0.8 +5.0 4993 1.8 SNHG18 SNORD123 LOC101929359
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD123 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD123 gene promoter:

Genomic Locations for SNORD123 Gene

Genomic Locations for SNORD123 Gene
88 bases
Plus strand

Genomic View for SNORD123 Gene

Genes around SNORD123 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD123 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD123 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD123 Gene

Proteins for SNORD123 Gene

Post-translational modifications for SNORD123 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD123 Gene

Domains & Families for SNORD123 Gene

Gene Families for SNORD123 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD123: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD123 Gene

Function for SNORD123 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD123 Gene

Localization for SNORD123 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD123 Gene

Pathways & Interactions for SNORD123 Gene

SuperPathways for SNORD123 Gene

No Data Available

Interacting Proteins for SNORD123 Gene

Gene Ontology (GO) - Biological Process for SNORD123 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD123 Gene

Drugs & Compounds for SNORD123 Gene

No Compound Related Data Available

Transcripts for SNORD123 Gene

mRNA/cDNA for SNORD123 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD123 Gene

No ASD Table

Relevant External Links for SNORD123 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD123 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD123 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD123 Gene:

genes like me logo Genes that share expression patterns with SNORD123: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD123 Gene

Orthologs for SNORD123 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD123 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD123 34
  • 99 (a)
(Bos Taurus)
Mammalia SNORD123 34
  • 97 (a)
(Monodelphis domestica)
Mammalia SNORD123 34
  • 96 (a)
(Mus musculus)
Mammalia Snord123 34
  • 96 (a)
(Canis familiaris)
Mammalia SNORD123 34
  • 94 (a)
(Ornithorhynchus anatinus)
Mammalia SNORD123 34
  • 90 (a)
(Gallus gallus)
Aves SNORD123 34
  • 94 (a)
Species where no ortholog for SNORD123 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD123 Gene

Gene Tree for SNORD123 (if available)
Gene Tree for SNORD123 (if available)

Paralogs for SNORD123 Gene

No data available for Paralogs for SNORD123 Gene

Variants for SNORD123 Gene

Sequence variations from dbSNP and Humsavar for SNORD123 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000580714 -- 9,547,522(+) A/C upstream_transcript_variant
rs1002269841 -- 9,546,933(+) T/G upstream_transcript_variant
rs1004780923 -- 9,547,800(+) A/G upstream_transcript_variant
rs1008957294 -- 9,549,018(+) T/C downstream_transcript_variant
rs1009050692 -- 9,548,709(+) GG/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD123 Gene

Variant ID Type Subtype PubMed ID
dgv5565n100 CNV gain 25217958
nsv1032672 CNV gain 25217958
nsv597071 CNV gain 21841781
nsv597073 CNV loss 21841781

Additional Variant Information for SNORD123 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD123 Gene

Disorders for SNORD123 Gene

Additional Disease Information for SNORD123

No disorders were found for SNORD123 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD123 Gene

Publications for SNORD123 Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  2. A genome-wide linkage and association scan reveals novel loci for autism. (PMID: 19812673) Weiss LA … Chakravarti A (Nature 2009) 44 58
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 44 58
  4. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58
  5. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58

Products for SNORD123 Gene

Sources for SNORD123 Gene

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