Aliases for SNORD12 Gene

Subcategory (RNA class) for SNORD12 Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for SNORD12 Gene

  • Small Nucleolar RNA, C/D Box 12 2 3 5
  • MicroRNA 1259 2 3
  • SNORD12 2 176
  • Hsa-Mir-1259 3
  • MIRN1259 3
  • HBII-99 3
  • MIR1259 3
  • RF00581 174

External Ids for SNORD12 Gene

Previous HGNC Symbols for SNORD12 Gene

  • MIR1259
  • MIRN1259

Previous GeneCards Identifiers for SNORD12 Gene

  • GC20P047332
  • GC20P047335
  • GC20P047339
  • GC20P047343
  • GC20P047345
  • GC20P047897
  • GC20P044646
  • GC20P049285
  • GC20P049290
  • GC20P049329
  • GC20P049334
  • GC20P049294
  • GC20P049298
  • GC20P049302
  • GC20P049308
  • GC20P049312
  • GC20P049316
  • GC20P049320
  • GC20P049324

Summaries for SNORD12 Gene

GeneCards Summary for SNORD12 Gene

SNORD12 (Small Nucleolar RNA, C/D Box 12) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD12 Gene

  • Small nucleolar SNORD12/SNORD106

Additional gene information for SNORD12 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD12 Gene

Genomics for SNORD12 Gene

GeneHancer (GH) Regulatory Elements for SNORD12 Gene

Promoters and enhancers for SNORD12 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD12 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD12 gene promoter:
  • AML1a
  • Bach1
  • HFH-1
  • HOXA3
  • HTF
  • LCR-F1
  • NF-kappaB
  • NF-kappaB1
  • Sp1

Genomic Locations for SNORD12 Gene

Genomic Locations for SNORD12 Gene
chr20:49,280,683-49,280,772
(GRCh38/hg38)
Size:
90 bases
Orientation:
Plus strand
chr20:47,897,220-47,897,309
(GRCh37/hg19)
Size:
90 bases
Orientation:
Plus strand

Genomic View for SNORD12 Gene

Genes around SNORD12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD12 Gene

Proteins for SNORD12 Gene

Post-translational modifications for SNORD12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD12 Gene

Domains & Families for SNORD12 Gene

Gene Families for SNORD12 Gene

genes like me logo Genes that share domains with SNORD12: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD12 Gene

Function for SNORD12 Gene

Phenotypes From GWAS Catalog for SNORD12 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD12 Gene

Localization for SNORD12 Gene

Gene Ontology (GO) - Cellular Components for SNORD12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD12: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD12 Gene

Pathways & Interactions for SNORD12 Gene

PathCards logo

SuperPathways for SNORD12 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD12: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD12 Gene

Drugs & Compounds for SNORD12 Gene

No Compound Related Data Available

Transcripts for SNORD12 Gene

mRNA/cDNA for SNORD12 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD12 Gene

No ASD Table

Relevant External Links for SNORD12 Gene

GeneLoc Exon Structure for
SNORD12
ECgene alternative splicing isoforms for
SNORD12

Expression for SNORD12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD12 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD12 Gene:

SNORD12
genes like me logo Genes that share expression patterns with SNORD12: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD12 Gene

Orthologs for SNORD12 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD12 33
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD12 33
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD12 33
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord12 33
  • 82 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORD12 33
  • 67 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD12 33
  • 67 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD12 33
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORD12 33
  • 58 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD12 33
  • 66 (a)
ManyToMany
Species where no ortholog for SNORD12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD12 Gene

ENSEMBL:
Gene Tree for SNORD12 (if available)
TreeFam:
Gene Tree for SNORD12 (if available)

Paralogs for SNORD12 Gene

No data available for Paralogs for SNORD12 Gene

Variants for SNORD12 Gene

Sequence variations from dbSNP and Humsavar for SNORD12 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000070514 -- 49,279,695(+) T/C upstream_transcript_variant
rs1001655437 -- 49,280,476(+) T/C upstream_transcript_variant
rs1003210719 -- 49,279,407(+) C/G/T upstream_transcript_variant
rs1004241048 -- 49,280,077(+) A/T upstream_transcript_variant
rs1004465473 -- 49,279,581(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD12 Gene

Variant ID Type Subtype PubMed ID
dgv1248e212 CNV loss 25503493
nsv1064443 CNV gain 25217958
nsv1067146 CNV loss 25217958
nsv437839 CNV loss 16327808

Additional Variant Information for SNORD12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD12 Gene

Disorders for SNORD12 Gene

Additional Disease Information for SNORD12

No disorders were found for SNORD12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD12 Gene

Publications for SNORD12 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 56
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56

Products for SNORD12 Gene

Sources for SNORD12 Gene