SNORD12 Gene (RNA Gene)

Small Nucleolar RNA, C/D Box 12

GC20P049353
GIFtS:
15
See more...

Aliases for SNORD12 Gene

Data sources for SNORD12 Gene:

Subcategory (RNA class) for SNORD12 Gene

snoRNA

Aliases for SNORD12 Gene

External Ids for SNORD12 Gene

Previous HGNC Symbols for SNORD12 Gene

  • MIR1259
  • MIRN1259

Previous GeneCards Identifiers for SNORD12 Gene

  • GC20P047332
  • GC20P047335
  • GC20P047339
  • GC20P047343
  • GC20P047345
  • GC20P047897
  • GC20P044646
  • GC20P049285
  • GC20P049290
  • GC20P049329
  • GC20P049334
  • GC20P049338
  • GC20P049342
  • GC20P049294
  • GC20P049298
  • GC20P049302
  • GC20P049308
  • GC20P049312
  • GC20P049316
  • GC20P049320
  • GC20P049324
  • GC20P049346

Summaries for SNORD12 Gene

GeneCards Summary for SNORD12 Gene

SNORD12 (Small Nucleolar RNA, C/D Box 12) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD12 Gene

  • Small nucleolar SNORD12/SNORD106

Additional gene information for SNORD12 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD12 Gene

Genomics for SNORD12 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SNORD12 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD12 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD12 gene promoter:
  • AML1a
  • Bach1
  • HFH-1
  • HOXA3
  • HTF
  • LCR-F1
  • NF-kappaB
  • NF-kappaB1
  • Sp1

Genomic Locations for SNORD12 Gene

Latest Assembly
chr20:49,280,683-49,280,772
(GRCh38/hg38)
Size:
90 bases
Orientation:
Plus strand

Previous Assembly
chr20:47,897,220-47,897,309
(GRCh37/hg19 by Entrez Gene)
Size:
90 bases
Orientation:
Plus strand

chr20:47,897,220-47,897,309
(GRCh37/hg19 by Ensembl)
Size:
90 bases
Orientation:
Plus strand

Genomic View for SNORD12 Gene

Genes around SNORD12 on UCSC Golden Path with GeneCards custom track
SNORD12 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SNORD12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD12 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD12 Gene

Proteins for SNORD12 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SNORD12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD12 Gene

Domains & Families for SNORD12 Gene

Gene Families for SNORD12 Gene

HGNC:
genes like me logo Genes that share domains with SNORD12: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD12 Gene

Function for SNORD12 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for SNORD12 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD12 Gene

Localization for SNORD12 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD12 gene
Compartment Confidence
nucleus 1

Gene Ontology (GO) - Cellular Components for SNORD12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD12: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for SNORD12 Gene

Pathways & Interactions for SNORD12 Gene

PathCards logo

SuperPathways for SNORD12 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD12: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD12 Gene

Drugs & Compounds for SNORD12 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for SNORD12 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD12 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006B5455_9606 snoRNA 90 5

RefSeq: NR_003030,

Ensembl: ENST00000391002 (view in UCSC) ,

Rfam: RF00581,

snoDB: SNODB1708,

snOPY: Homo_sapiens300492,

URS0001BC25F1_9606 snoRNA 90 1

Rfam: RF00581,

SNORD12 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

CRISPR products for research

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD12 Gene

No ASD Table

Relevant External Links for SNORD12 Gene

GeneLoc Exon Structure for
SNORD12

No data available for mRNA/cDNA for SNORD12 Gene

Expression for SNORD12 Gene

Products:

  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD12 Gene

mRNA expression in normal human tissues for SNORD12 Gene
mRNA expression by GTEx for SNORD12 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD12

genes like me logo Genes that share expression patterns with SNORD12: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD12 Gene

Orthologs for SNORD12 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD12 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia SNORD12 31
  • 100 (a)
 OneToOne
Cow
(Bos Taurus)
 Mammalia SNORD12 31
  • 85 (a)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Snord12 31
  • 82 (a)
 ManyToMany
Dog
(Canis familiaris)
 Mammalia SNORD12 31
  • 82 (a)
 OneToOne
Platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD12 31
  • 67 (a)
 ManyToMany
Oppossum
(Monodelphis domestica)
 Mammalia SNORD12 31
  • 67 (a)
 ManyToMany
Chicken
(Gallus gallus)
 Aves SNORD12 31
  • 61 (a)
 OneToMany
Lizard
(Anolis carolinensis)
 Reptilia SNORD12 31
  • 58 (a)
 ManyToMany
Zebrafish
(Danio rerio)
 Actinopterygii SNORD12 31
  • 66 (a)
 ManyToMany
Species where no ortholog for SNORD12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for SNORD12 Gene

ENSEMBL:
Gene Tree for SNORD12 (if available)
TreeFam:
Gene Tree for SNORD12 (if available)

Paralogs for SNORD12 Gene

No data available for Paralogs for SNORD12 Gene

Variants for SNORD12 Gene

Products:

  1. SNP Genotyping and Copy Number Assays for research

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SNORD12 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SNORD12 Gene

Variant ID Type Subtype PubMed ID
dgv1248e212 CNV loss 25503493
nsv1064443 CNV gain 25217958
nsv1067146 CNV loss 25217958
nsv437839 CNV loss 16327808

Additional Variant Information for SNORD12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD12

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD12 Gene

Disorders for SNORD12 Gene

Additional Disease Information for SNORD12

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD12 Gene

Publications for SNORD12 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

ExternalLinks

View latest publications for SNORD12 gene in Mastermind

Products for SNORD12 Gene

Sources for SNORD12 Gene