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SNORD12 Gene(RNA Gene)

Small Nucleolar RNA, C/D Box 12

GCID:
GC20P049316
GIFtS:
16
Genes Participants
UDN Logo

Aliases for SNORD12 Gene

Subcategory (RNA class) for SNORD12 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD12 Gene

  • Small Nucleolar RNA, C/D Box 12 2 3 5
  • MicroRNA 1259 2 3
  • Hsa-Mir-1259 3
  • MIRN1259 3
  • HBII-99 3
  • MIR1259 3

External Ids for SNORD12 Gene

ORGUL Members for SNORD12 Gene

Previous HGNC Symbols for SNORD12 Gene

  • MIR1259
  • MIRN1259

Previous GeneCards Identifiers for SNORD12 Gene

  • GC20P047332
  • GC20P047335
  • GC20P047339
  • GC20P047343
  • GC20P047345
  • GC20P047897
  • GC20P044646
  • GC20P049285
  • GC20P049290
  • GC20P049294
  • GC20P049298
  • GC20P049302
  • GC20P049308
  • GC20P049312

Summaries for SNORD12 Gene

GeneCards Summary for SNORD12 Gene

SNORD12 (Small Nucleolar RNA, C/D Box 12) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD12 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD12 Gene

Genomics for SNORD12 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNORD12 Gene

Promoters and enhancers for SNORD12 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20I049275 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 560.5 -0.7 -728 9.2 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 ZNFX1 SNORD12B ZFAS1 SNORD12 ENSG00000274760 ENSG00000277830 ENSG00000277967 GC20P049313 GC20P049317 GC20P049318
GH20I050186 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.8 +910.6 910595 10.3 CLOCK MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 CEBPB CEBPB-AS1 GC20P050191 ADNP DDX27 DPM1 MOCS3 ENSG00000232043 SNORD12B LINC01273
GH20I049981 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 9.8 +702.8 702848 3.3 HDGF PKNOX1 CLOCK SMAD1 MLX ZFP64 ARID4B SIN3A YBX1 DMAP1 SNAI1 DDX27 ADNP ENSG00000232043 SNORD12B SLC9A8 MOCS3 RNF114 PSMD10P1 DPM1
GH20I049045 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.8 -233.8 -233825 3 HDGF PKNOX1 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 CSE1L CSE1L-AS1 DDX27 RNF114 SNORD12B ZNFX1 ZFAS1 ARFGEF2 SNORD12 GC20P049089
GH20I049323 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.6 +43.3 43349 0.9 HDAC1 ARNT SIN3A RAD21 RFX5 RUNX3 CREM ZNF654 REST ELF1 ZNFX1 KCNB1 SNORD12B SNORD12 ARFGEF2 LOC105372649 GC20M049341
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD12 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD12 gene promoter:

Genomic Locations for SNORD12 Gene

Genomic Locations for SNORD12 Gene
chr20:49,280,683-49,280,772
(GRCh38/hg38)
Size:
90 bases
Orientation:
Plus strand
chr20:47,897,220-47,897,309
(GRCh37/hg19)

Genomic View for SNORD12 Gene

Genes around SNORD12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD12 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNORD12 Gene

Proteins for SNORD12 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNORD12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD12 Gene

Domains & Families for SNORD12 Gene

Gene Families for SNORD12 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD12: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD12 Gene

Function for SNORD12 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD12 Gene

Localization for SNORD12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD12 Gene

Pathways & Interactions for SNORD12 Gene

SuperPathways for SNORD12 Gene

PathCards logo More details on SuperPathways for SNORD12
No Data Available

Interacting Proteins for SNORD12 Gene

Gene Ontology (GO) - Biological Process for SNORD12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD12 Gene

Drugs & Compounds for SNORD12 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNORD12 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNORD12 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD12 Gene

No ASD Table

Relevant External Links for SNORD12 Gene

GeneLoc Exon Structure for
SNORD12
ECgene alternative splicing isoforms for
SNORD12

Expression for SNORD12 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD12 Gene

mRNA expression in normal human tissues for SNORD12 Gene
mRNA expression by GTEx for SNORD12 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD12 Gene:

SNORD12
genes like me logo Genes that share expression patterns with SNORD12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD12 Gene

Orthologs for SNORD12 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia SNORD12 34
  • 100 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia SNORD12 34
  • 85 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia SNORD12 34
  • 82 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Snord12 34
  • 82 (a)
 ManyToMany
oppossum
(Monodelphis domestica)
 Mammalia SNORD12 34
  • 67 (a)
 ManyToMany
platypus
(Ornithorhynchus anatinus)
 Mammalia SNORD12 34
  • 67 (a)
 ManyToMany
chicken
(Gallus gallus)
 Aves SNORD12 34
  • 61 (a)
 OneToMany
lizard
(Anolis carolinensis)
 Reptilia SNORD12 34
  • 58 (a)
 ManyToMany
zebrafish
(Danio rerio)
 Actinopterygii SNORD12 34
  • 66 (a)
 ManyToMany
Species where no ortholog for SNORD12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD12 Gene

ENSEMBL:
Gene Tree for SNORD12 (if available)
TreeFam:
Gene Tree for SNORD12 (if available)

Paralogs for SNORD12 Gene

No data available for Paralogs for SNORD12 Gene

Variants for SNORD12 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SNORD12 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000070514 -- 49,279,695(+) T/C upstream_transcript_variant
rs1001655437 -- 49,280,476(+) T/C upstream_transcript_variant
rs1003210719 -- 49,279,407(+) C/G/T upstream_transcript_variant
rs1004241048 -- 49,280,077(+) A/T upstream_transcript_variant
rs1004465473 -- 49,279,581(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD12 Gene

Variant ID Type Subtype PubMed ID
dgv1248e212 CNV loss 25503493
nsv1064443 CNV gain 25217958
nsv1067146 CNV loss 25217958
nsv437839 CNV loss 16327808

Additional Variant Information for SNORD12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD12 Gene

Disorders for SNORD12 Gene

Additional Disease Information for SNORD12

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNORD12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD12 Gene

Publications for SNORD12 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD12 Gene

Sources for SNORD12 Gene

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