Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORD119 Gene

Subcategory (RNA class) for SNORD119 Gene

undefined

Quality Score for this RNA gene is

2

Aliases for SNORD119 Gene

  • Small Nucleolar RNA, C/D Box 119 2 3

External Ids for SNORD119 Gene

ORGUL Members for SNORD119 Gene

Previous GeneCards Identifiers for SNORD119 Gene

  • GC20U900296
  • GC20M002391
  • GC20M002443
  • GC20M002393

Summaries for SNORD119 Gene

GeneCards Summary for SNORD119 Gene

SNORD119 (Small Nucleolar RNA, C/D Box 119) is an RNA Gene, and is affiliated with the undefined RNA class.

Additional gene information for SNORD119 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD119 Gene

Genomics for SNORD119 Gene

GeneHancer (GH) Regulatory Elements for SNORD119 Gene

Promoters and enhancers for SNORD119 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I002351 Enhancer 1 Ensembl ENCODE 11.6 +110.9 110850 0.8 RB1 ARID4B ZNF48 ZSCAN9 RAD21 ZNF143 THAP11 MIXL1 ZNF654 ZNF362 GC20P002353 TGM6 SNORD119 TGM3 GC20M002343 GC20M002352
GH20I002468 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 -7.0 -6992 3.5 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC SNRPB VPS16 ZNF343 NOP56 ITPA UBOX5 SNORD119 GC20M002464 ENSG00000256566
GH20I002467 Enhancer 0.3 ENCODE 0.8 -4.8 -4777 0 POLR2A GC20M002464 SNRPB SNORD119 ENSG00000256566
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD119 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD119 gene promoter:

Genomic Locations for SNORD119 Gene

Genomic Locations for SNORD119 Gene
chr20:2,462,952-2,463,047
(GRCh38/hg38)
Size:
96 bases
Orientation:
Minus strand
chr20:2,443,598-2,443,693
(GRCh37/hg19)

Genomic View for SNORD119 Gene

Genes around SNORD119 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD119 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD119 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD119 Gene

Proteins for SNORD119 Gene

Post-translational modifications for SNORD119 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD119 Gene

Domains & Families for SNORD119 Gene

Gene Families for SNORD119 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD119: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD119 Gene

Function for SNORD119 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD119 Gene

Localization for SNORD119 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD119 Gene

Pathways & Interactions for SNORD119 Gene

SuperPathways for SNORD119 Gene

No Data Available

Interacting Proteins for SNORD119 Gene

Gene Ontology (GO) - Biological Process for SNORD119 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD119 Gene

Drugs & Compounds for SNORD119 Gene

No Compound Related Data Available

Transcripts for SNORD119 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD119 Gene

No ASD Table

Relevant External Links for SNORD119 Gene

GeneLoc Exon Structure for
SNORD119
ECgene alternative splicing isoforms for
SNORD119

No data available for mRNA/cDNA for SNORD119 Gene

Expression for SNORD119 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD119 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD119 Gene:

SNORD119
genes like me logo Genes that share expression patterns with SNORD119: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD119 Gene

Orthologs for SNORD119 Gene

No data available for Orthologs and Evolution for SNORD119 Gene

Paralogs for SNORD119 Gene

No data available for Paralogs for SNORD119 Gene

Variants for SNORD119 Gene

Sequence variations from dbSNP and Humsavar for SNORD119 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs771983255 uncertain-significance, not specified 2,462,714(-) T/C downstream_transcript_variant
rs1001068628 -- 2,462,855(-) A/T downstream_transcript_variant
rs1003496491 -- 2,464,483(-) G/A upstream_transcript_variant
rs1005480355 -- 2,462,513(-) T/C downstream_transcript_variant
rs1008070784 -- 2,463,395(-) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD119 Gene

Variant ID Type Subtype PubMed ID
nsv470535 CNV gain 18288195
esv3644998 CNV gain 21293372
esv2758778 CNV gain 17122850

Additional Variant Information for SNORD119 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD119

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD119 Gene

Disorders for SNORD119 Gene

Additional Disease Information for SNORD119

No disorders were found for SNORD119 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD119 Gene

Publications for SNORD119 Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58

Products for SNORD119 Gene

Sources for SNORD119 Gene

Content
Loading form....