Aliases for SNORD116-4 Gene

Subcategory (RNA class) for SNORD116-4 Gene

snoRNA

Quality Score for this RNA gene is

14

Aliases for SNORD116-4 Gene

  • Small Nucleolar RNA, C/D Box 116-4 2 3 5
  • SNORD116-4 2 176
  • HBII-85-4 3
  • RF00108 174

External Ids for SNORD116-4 Gene

Previous GeneCards Identifiers for SNORD116-4 Gene

  • GC15P023246
  • GC15P023331
  • GC15U900946
  • GC15P023431
  • GC15P023514
  • GC15P023608
  • GC15P025304
  • GC15P003440
  • GC15P025250
  • GC15P025223

Summaries for SNORD116-4 Gene

GeneCards Summary for SNORD116-4 Gene

SNORD116-4 (Small Nucleolar RNA, C/D Box 116-4) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD116-4 Gene

  • Small nucleolar RNA SNORD116

Additional gene information for SNORD116-4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD116-4 Gene

Genomics for SNORD116-4 Gene

GeneHancer (GH) Regulatory Elements for SNORD116-4 Gene


Top Transcription factor binding sites by QIAGEN in the SNORD116-4 gene promoter:
  • CUTL1
  • FOXD3
  • POU3F2

Genomic Locations for SNORD116-4 Gene

Genomic Locations for SNORD116-4 Gene
chr15:25,059,537-25,059,634
(GRCh38/hg38)
Size:
98 bases
Orientation:
Plus strand
chr15:25,223,730-25,664,609
(GRCh37/hg19)
Size:
440,880 bases
Orientation:
Plus strand

Genomic View for SNORD116-4 Gene

Genes around SNORD116-4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-4 Gene

Proteins for SNORD116-4 Gene

Post-translational modifications for SNORD116-4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-4 Gene

Domains & Families for SNORD116-4 Gene

Gene Families for SNORD116-4 Gene

genes like me logo Genes that share domains with SNORD116-4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD116-4 Gene

Function for SNORD116-4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-4 Gene

Localization for SNORD116-4 Gene

Gene Ontology (GO) - Cellular Components for SNORD116-4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD116-4: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD116-4 Gene

Pathways & Interactions for SNORD116-4 Gene

PathCards logo

SuperPathways for SNORD116-4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD116-4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD116-4: view

No data available for Pathways by source and SIGNOR curated interactions for SNORD116-4 Gene

Drugs & Compounds for SNORD116-4 Gene

No Compound Related Data Available

Transcripts for SNORD116-4 Gene

mRNA/cDNA for SNORD116-4 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) Rfam transcripts :
(1) snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-4 Gene

No ASD Table

Relevant External Links for SNORD116-4 Gene

GeneLoc Exon Structure for
SNORD116-4
ECgene alternative splicing isoforms for
SNORD116-4

Expression for SNORD116-4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD116-4 Gene

genes like me logo Genes that share expression patterns with SNORD116-4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD116-4 Gene

Orthologs for SNORD116-4 Gene

Evolution for SNORD116-4 Gene

ENSEMBL:
Gene Tree for SNORD116-4 (if available)
TreeFam:
Gene Tree for SNORD116-4 (if available)

No data available for Orthologs for SNORD116-4 Gene

Paralogs for SNORD116-4 Gene

No data available for Paralogs for SNORD116-4 Gene

Variants for SNORD116-4 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-4 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000194216 -- 25,057,900(+) C/G/T upstream_transcript_variant
rs1001163260 -- 25,059,437(+) C/A/T upstream_transcript_variant
rs1001636439 -- 25,059,739(+) G/A downstream_transcript_variant
rs1002673947 -- 25,059,215(+) C/A upstream_transcript_variant
rs1003223130 -- 25,058,347(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-4 Gene

Variant ID Type Subtype PubMed ID
dgv2474n100 CNV gain 25217958
dgv2475n100 CNV gain+loss 25217958
dgv2476n100 CNV gain 25217958
dgv2477n100 CNV loss 25217958
esv29021 CNV gain+loss 19812545
esv3581567 CNV loss 25503493
esv3584898 CNV gain 24956385
nsv1045067 CNV gain 25217958
nsv952575 CNV deletion 24416366

Additional Variant Information for SNORD116-4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD116-4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD116-4 Gene

Disorders for SNORD116-4 Gene

Additional Disease Information for SNORD116-4

No disorders were found for SNORD116-4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-4 Gene

Publications for SNORD116-4 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 56
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) Cavaillé J … Hüttenhofer A (Proceedings of the National Academy of Sciences of the United States of America 2000) 2 3 56
  3. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3 56
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 56

Products for SNORD116-4 Gene

Sources for SNORD116-4 Gene