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Aliases for SNORD116-29 Gene

Subcategory (RNA class) for SNORD116-29 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD116-29 Gene

  • Small Nucleolar RNA, C/D Box 116-29 2 3 5
  • HBII-85-29 3

External Ids for SNORD116-29 Gene

ORGUL Members for SNORD116-29 Gene

Previous GeneCards Identifiers for SNORD116-29 Gene

  • GC15P023252
  • GC15P023324
  • GC15U900925
  • GC15P023452
  • GC15P023582
  • GC15P023680
  • GC15P025351
  • GC15P003487

Summaries for SNORD116-29 Gene

GeneCards Summary for SNORD116-29 Gene

SNORD116-29 (Small Nucleolar RNA, C/D Box 116-29) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD116-29 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-29 Gene

Genomics for SNORD116-29 Gene

GeneHancer (GH) Regulatory Elements for SNORD116-29 Gene

Promoters and enhancers for SNORD116-29 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I025134 Enhancer 0.4 ENCODE 11.6 +28.2 28249 0.2 CTCF POLR2A PWAR1 SNORD116-29 SNORD116-30 SNHG14 ENSG00000212428 SNORD115-1 SNORD115-2 SNORD116-27 SNORD116-25 SNORD116-26
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD116-29 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD116-29 gene promoter:

Genomic Locations for SNORD116-29 Gene

Genomic Locations for SNORD116-29 Gene
chr15:25,106,520-25,106,604
(GRCh38/hg38)
Size:
85 bases
Orientation:
Plus strand
chr15:25,351,667-25,351,751
(GRCh37/hg19)

Genomic View for SNORD116-29 Gene

Genes around SNORD116-29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-29 Gene

Proteins for SNORD116-29 Gene

Post-translational modifications for SNORD116-29 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-29 Gene

Domains & Families for SNORD116-29 Gene

Gene Families for SNORD116-29 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-29: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-29 Gene

Function for SNORD116-29 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-29 Gene

Localization for SNORD116-29 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD116-29 Gene

Pathways & Interactions for SNORD116-29 Gene

SuperPathways for SNORD116-29 Gene

No Data Available

Interacting Proteins for SNORD116-29 Gene

Gene Ontology (GO) - Biological Process for SNORD116-29 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD116-29 Gene

Drugs & Compounds for SNORD116-29 Gene

No Compound Related Data Available

Transcripts for SNORD116-29 Gene

mRNA/cDNA for SNORD116-29 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-29 Gene

No ASD Table

Relevant External Links for SNORD116-29 Gene

GeneLoc Exon Structure for
SNORD116-29
ECgene alternative splicing isoforms for
SNORD116-29

Expression for SNORD116-29 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD116-29 Gene

genes like me logo Genes that share expression patterns with SNORD116-29: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD116-29 Gene

Orthologs for SNORD116-29 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD116-29 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD116 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD116 34
  • 68 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD116 34
  • 55 (a)
OneToMany
Species where no ortholog for SNORD116-29 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-29 Gene

ENSEMBL:
Gene Tree for SNORD116-29 (if available)
TreeFam:
Gene Tree for SNORD116-29 (if available)

Paralogs for SNORD116-29 Gene

No data available for Paralogs for SNORD116-29 Gene

Variants for SNORD116-29 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-29 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000331559 -- 25,106,105(+) T/C upstream_transcript_variant
rs1000333401 -- 25,105,342(+) A/G upstream_transcript_variant
rs1000787261 -- 25,106,409(+) C/T upstream_transcript_variant
rs1001835516 -- 25,105,827(+) A/G upstream_transcript_variant
rs1002289271 -- 25,106,030(+) C/T upstream_transcript_variant

Additional Variant Information for SNORD116-29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD116-29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD116-29 Gene

Disorders for SNORD116-29 Gene

Additional Disease Information for SNORD116-29

No disorders were found for SNORD116-29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-29 Gene

Publications for SNORD116-29 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 58
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) Cavaillé J … Hüttenhofer A (Proceedings of the National Academy of Sciences of the United States of America 2000) 2 3 58
  3. Multiple myeloma-associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress. (PMID: 22751105) Chu L … Tomasson MH (The Journal of clinical investigation 2012) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD116-29 Gene

Sources for SNORD116-29 Gene

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