Aliases for SNORD116-27 Gene

Subcategory (RNA class) for SNORD116-27 Gene


Number of RNA Genes sources:

3 / 14

Aliases for SNORD116-27 Gene

  • Small Nucleolar RNA, C/D Box 116-27 2 3 5
  • SNORD116-27 2 174
  • HBII-85-27 3
  • RF00108 172

External Ids for SNORD116-27 Gene

Previous GeneCards Identifiers for SNORD116-27 Gene

  • GC15P023265
  • GC15P023311
  • GC15U900800
  • GC15P023426
  • GC15P023501
  • GC15P023589
  • GC15P025346
  • GC15P003482
  • GC15P025102
  • GC15P025117
  • GC15P025976
  • GC15P026042
  • GC15P026085
  • GC15P025136
  • GC15P025175
  • GC15P025562
  • GC15P025639
  • GC15P025725
  • GC15P025785
  • GC15P025849
  • GC15P025914

Summaries for SNORD116-27 Gene

GeneCards Summary for SNORD116-27 Gene

SNORD116-27 (Small Nucleolar RNA, C/D Box 116-27) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD116-27 Gene

  • Small nucleolar RNA SNORD116

Additional gene information for SNORD116-27 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD116-27 Gene

Genomics for SNORD116-27 Gene

GeneHancer (GH) Regulatory Elements for SNORD116-27 Gene

Promoters and enhancers for SNORD116-27 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J025134 Enhancer 0.3 ENCODE 11.3 +33.2 33195 0.2 CTCF POLR2A PWAR1 SNORD116-29 SNORD116-30 SNHG14 ENSG00000212428 SNORD115-1 SNORD115-2 SNORD116-27 SNORD116-25 SNORD116-26
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD116-27 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD116-27 gene promoter:
  • CUTL1

Genomic Locations for SNORD116-27 Gene

Genomic Locations for SNORD116-27 Gene
94 bases
Plus strand
94 bases
Plus strand

Genomic View for SNORD116-27 Gene

Genes around SNORD116-27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-27 Gene

Proteins for SNORD116-27 Gene

Post-translational modifications for SNORD116-27 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-27 Gene

Domains & Families for SNORD116-27 Gene

Gene Families for SNORD116-27 Gene

genes like me logo Genes that share domains with SNORD116-27: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD116-27 Gene

Function for SNORD116-27 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-27 Gene

Localization for SNORD116-27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD116-27 Gene

Pathways & Interactions for SNORD116-27 Gene

PathCards logo

SuperPathways for SNORD116-27 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD116-27 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD116-27 Gene

Drugs & Compounds for SNORD116-27 Gene

No Compound Related Data Available

Transcripts for SNORD116-27 Gene

mRNA/cDNA for SNORD116-27 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-27 Gene

No ASD Table

Relevant External Links for SNORD116-27 Gene

GeneLoc Exon Structure for

Expression for SNORD116-27 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD116-27 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD116-27

genes like me logo Genes that share expression patterns with SNORD116-27: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD116-27 Gene

Orthologs for SNORD116-27 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD116-27 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD116 31
  • 100 (a)
(Bos Taurus)
Mammalia SNORD116 31
  • 57 (a)
(Canis familiaris)
Mammalia SNORD116 31
  • 49 (a)
Species where no ortholog for SNORD116-27 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-27 Gene

Gene Tree for SNORD116-27 (if available)
Gene Tree for SNORD116-27 (if available)

Paralogs for SNORD116-27 Gene

No data available for Paralogs for SNORD116-27 Gene

Variants for SNORD116-27 Gene

Additional dbSNP identifiers (rs#s) for SNORD116-27 Gene

Additional Variant Information for SNORD116-27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORD116-27 Gene

Disorders for SNORD116-27 Gene

Additional Disease Information for SNORD116-27

No disorders were found for SNORD116-27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-27 Gene

Publications for SNORD116-27 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 54
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) Cavaillé J … Hüttenhofer A (Proceedings of the National Academy of Sciences of the United States of America 2000) 2 3 54
  3. Long noncoding RNAs with snoRNA ends. (PMID: 22959273) Yin QF … Chen LL (Molecular cell 2012) 3 54
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORD116-27 Gene

Sources for SNORD116-27 Gene