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Aliases for SNORD116-19 Gene

Subcategory (RNA class) for SNORD116-19 Gene


Quality Score for this RNA gene is


Aliases for SNORD116-19 Gene

  • Small Nucleolar RNA, C/D Box 116-19 2 3 5
  • HBII-85-19 3

External Ids for SNORD116-19 Gene

ORGUL Members for SNORD116-19 Gene

Previous GeneCards Identifiers for SNORD116-19 Gene

  • GC15P023271
  • GC15P023344
  • GC15P023410
  • GC15P023446
  • GC15P023527
  • GC15P023672
  • GC15P025331
  • GC15P003467

Summaries for SNORD116-19 Gene

GeneCards Summary for SNORD116-19 Gene

SNORD116-19 (Small Nucleolar RNA, C/D Box 116-19) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD116-19 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD116-19 Gene

Genomics for SNORD116-19 Gene

GeneHancer (GH) Regulatory Elements for SNORD116-19 Gene

Top Transcription factor binding sites by QIAGEN in the SNORD116-19 gene promoter:

Genomic Locations for SNORD116-19 Gene

Genomic Locations for SNORD116-19 Gene
94 bases
Plus strand

Genomic View for SNORD116-19 Gene

Genes around SNORD116-19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-19 Gene

Proteins for SNORD116-19 Gene

Post-translational modifications for SNORD116-19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-19 Gene

Domains & Families for SNORD116-19 Gene

Gene Families for SNORD116-19 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD116-19: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD116-19 Gene

Function for SNORD116-19 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-19 Gene

Localization for SNORD116-19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD116-19 Gene

Pathways & Interactions for SNORD116-19 Gene

SuperPathways for SNORD116-19 Gene

No Data Available

Interacting Proteins for SNORD116-19 Gene

Gene Ontology (GO) - Biological Process for SNORD116-19 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD116-19 Gene

Drugs & Compounds for SNORD116-19 Gene

No Compound Related Data Available

Transcripts for SNORD116-19 Gene

mRNA/cDNA for SNORD116-19 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-19 Gene

No ASD Table

Relevant External Links for SNORD116-19 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD116-19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD116-19 Gene

genes like me logo Genes that share expression patterns with SNORD116-19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD116-19 Gene

Orthologs for SNORD116-19 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD116-19 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD116 34
  • 98 (a)
(Mus musculus)
Mammalia Gm22373 34
  • 71 (a)
Species where no ortholog for SNORD116-19 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-19 Gene

Gene Tree for SNORD116-19 (if available)
Gene Tree for SNORD116-19 (if available)

Paralogs for SNORD116-19 Gene

No data available for Paralogs for SNORD116-19 Gene

Variants for SNORD116-19 Gene

Sequence variations from dbSNP and Humsavar for SNORD116-19 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000306920 -- 25,085,865(+) A/T upstream_transcript_variant
rs1000761296 -- 25,085,642(+) CTCT/CT upstream_transcript_variant
rs1001046188 -- 25,084,609(+) G/A/C upstream_transcript_variant
rs1001325480 -- 25,085,327(+) G/A upstream_transcript_variant
rs1001429073 -- 25,086,208(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-19 Gene

Variant ID Type Subtype PubMed ID
dgv2476n100 CNV gain 25217958
esv29021 CNV gain+loss 19812545
esv3584898 CNV gain 24956385
nsv1038717 CNV gain 25217958
nsv976897 CNV duplication 23825009
nsv977678 CNV duplication 23825009

Additional Variant Information for SNORD116-19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD116-19 Gene

Disorders for SNORD116-19 Gene

Additional Disease Information for SNORD116-19

No disorders were found for SNORD116-19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-19 Gene

Publications for SNORD116-19 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 58
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) Cavaillé J … Hüttenhofer A (Proceedings of the National Academy of Sciences of the United States of America 2000) 2 3 58
  3. Long noncoding RNAs with snoRNA ends. (PMID: 22959273) Yin QF … Chen LL (Molecular cell 2012) 3 58
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD116-19 Gene

Sources for SNORD116-19 Gene

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