Aliases for SNORD116-13 Gene

Subcategory (RNA class) for SNORD116-13 Gene


Number of RNA Genes sources:

3 / 14

Aliases for SNORD116-13 Gene

  • Small Nucleolar RNA, C/D Box 116-13 2 3 5
  • SNORD116-13 2 174
  • HBII-85-13 3
  • RF00108 172

External Ids for SNORD116-13 Gene

Previous GeneCards Identifiers for SNORD116-13 Gene

  • GC15P023244
  • GC15P023315
  • GC15U900907
  • GC15P023440
  • GC15P023522
  • GC15P023621
  • GC15P025324
  • GC15P003460

Summaries for SNORD116-13 Gene

GeneCards Summary for SNORD116-13 Gene

SNORD116-13 (Small Nucleolar RNA, C/D Box 116-13) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD116-13 Gene

  • Small nucleolar RNA SNORD116

Additional gene information for SNORD116-13 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD116-13 Gene

Genomics for SNORD116-13 Gene

GeneHancer (GH) Regulatory Elements for SNORD116-13 Gene

Top Transcription factor binding sites by QIAGEN in the SNORD116-13 gene promoter:
  • CUTL1
  • FOXD3
  • FOXO4

Genomic Locations for SNORD116-13 Gene

Genomic Locations for SNORD116-13 Gene
94 bases
Plus strand
94 bases
Plus strand

Genomic View for SNORD116-13 Gene

Genes around SNORD116-13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD116-13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD116-13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD116-13 Gene

Proteins for SNORD116-13 Gene

Post-translational modifications for SNORD116-13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD116-13 Gene

Domains & Families for SNORD116-13 Gene

Gene Families for SNORD116-13 Gene

genes like me logo Genes that share domains with SNORD116-13: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD116-13 Gene

Function for SNORD116-13 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD116-13 Gene

Localization for SNORD116-13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD116-13 Gene

Pathways & Interactions for SNORD116-13 Gene

PathCards logo

SuperPathways for SNORD116-13 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD116-13 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD116-13 Gene

Drugs & Compounds for SNORD116-13 Gene

No Compound Related Data Available

Transcripts for SNORD116-13 Gene

mRNA/cDNA for SNORD116-13 Gene

3 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 ENA transcripts :
1 Rfam transcripts :
1 snOPY transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD116-13 Gene

No ASD Table

Relevant External Links for SNORD116-13 Gene

GeneLoc Exon Structure for

Expression for SNORD116-13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD116-13 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD116-13

genes like me logo Genes that share expression patterns with SNORD116-13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD116-13 Gene

Orthologs for SNORD116-13 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNORD116-13 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD116 31
  • 95 (a)
(Mus musculus)
Mammalia Gm22373 31
  • 64 (a)
Species where no ortholog for SNORD116-13 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD116-13 Gene

Gene Tree for SNORD116-13 (if available)
Gene Tree for SNORD116-13 (if available)

Paralogs for SNORD116-13 Gene

No data available for Paralogs for SNORD116-13 Gene

Variants for SNORD116-13 Gene

Additional dbSNP identifiers (rs#s) for SNORD116-13 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD116-13 Gene

Variant ID Type Subtype PubMed ID
dgv2474n100 CNV gain 25217958
dgv2475n100 CNV gain+loss 25217958
dgv2476n100 CNV gain 25217958
dgv2477n100 CNV loss 25217958
esv29021 CNV gain+loss 19812545
esv3584898 CNV gain 24956385
nsv1038717 CNV gain 25217958
nsv1045067 CNV gain 25217958

Additional Variant Information for SNORD116-13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD116-13 Gene

Disorders for SNORD116-13 Gene

Additional Disease Information for SNORD116-13

No disorders were found for SNORD116-13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD116-13 Gene

Publications for SNORD116-13 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 54
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) Cavaillé J … Hüttenhofer A (Proceedings of the National Academy of Sciences of the United States of America 2000) 2 3 54
  3. Long noncoding RNAs with snoRNA ends. (PMID: 22959273) Yin QF … Chen LL (Molecular cell 2012) 3 54
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORD116-13 Gene

Sources for SNORD116-13 Gene