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Aliases for SNORD115-4 Gene

Subcategory (RNA class) for SNORD115-4 Gene


Quality Score for this RNA gene is


Aliases for SNORD115-4 Gene

  • Small Nucleolar RNA, C/D Box 115-4 2 3 5
  • HBII-52-4 3

External Ids for SNORD115-4 Gene

ORGUL Members for SNORD115-4 Gene

Previous GeneCards Identifiers for SNORD115-4 Gene

  • GC15U900711
  • GC15P023456
  • GC15P023537
  • GC15P023634
  • GC15P025421

Summaries for SNORD115-4 Gene

GeneCards Summary for SNORD115-4 Gene

SNORD115-4 (Small Nucleolar RNA, C/D Box 115-4) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD115-4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD115-4 Gene

Genomics for SNORD115-4 Gene

GeneHancer (GH) Regulatory Elements for SNORD115-4 Gene

Top Transcription factor binding sites by QIAGEN in the SNORD115-4 gene promoter:

Genomic Locations for SNORD115-4 Gene

Genomic Locations for SNORD115-4 Gene
82 bases
Plus strand

Genomic View for SNORD115-4 Gene

Genes around SNORD115-4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD115-4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD115-4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD115-4 Gene

Proteins for SNORD115-4 Gene

Post-translational modifications for SNORD115-4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD115-4 Gene

Domains & Families for SNORD115-4 Gene

Gene Families for SNORD115-4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD115-4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD115-4 Gene

Function for SNORD115-4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD115-4 Gene

Localization for SNORD115-4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD115-4 Gene

Pathways & Interactions for SNORD115-4 Gene

SuperPathways for SNORD115-4 Gene

No Data Available

Interacting Proteins for SNORD115-4 Gene

Gene Ontology (GO) - Biological Process for SNORD115-4 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD115-4 Gene

Drugs & Compounds for SNORD115-4 Gene

No Compound Related Data Available

Transcripts for SNORD115-4 Gene

mRNA/cDNA for SNORD115-4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD115-4 Gene

No ASD Table

Relevant External Links for SNORD115-4 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD115-4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD115-4 Gene

genes like me logo Genes that share expression patterns with SNORD115-4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD115-4 Gene

Orthologs for SNORD115-4 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SNORD115-4 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD115 34
  • 100 (a)
Species where no ortholog for SNORD115-4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD115-4 Gene

Gene Tree for SNORD115-4 (if available)
Gene Tree for SNORD115-4 (if available)

Paralogs for SNORD115-4 Gene

No data available for Paralogs for SNORD115-4 Gene

Variants for SNORD115-4 Gene

Sequence variations from dbSNP and Humsavar for SNORD115-4 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1001709592 -- 25,176,060(+) A/G upstream_transcript_variant
rs1002034471 -- 25,177,229(+) A/G downstream_transcript_variant
rs1002036997 -- 25,175,287(+) A/G upstream_transcript_variant
rs1003070025 -- 25,176,475(+) G/A upstream_transcript_variant
rs1003448447 -- 25,176,271(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD115-4 Gene

Variant ID Type Subtype PubMed ID
dgv2478n100 CNV gain 25217958
dgv2479n100 CNV gain 25217958
dgv2480n100 CNV loss 25217958
dgv2481n100 CNV gain 25217958
dgv2482n100 CNV gain 25217958
dgv2483n100 CNV gain+loss 25217958
dgv2484n100 CNV loss 25217958
dgv2485n100 CNV loss 25217958
dgv4382n54 CNV loss 21841781
dgv4385n54 CNV loss 21841781
dgv4386n54 CNV loss 21841781
dgv4387n54 CNV loss 21841781
dgv4388n54 CNV loss 21841781
dgv446e199 CNV deletion 23128226
dgv51e180 CNV deletion 20482838
dgv721e212 CNV loss 25503493
dgv722e212 CNV loss 25503493
esv2422156 CNV deletion 20811451
esv25915 CNV gain+loss 19812545
esv2761832 CNV gain+loss 21179565
esv3241568 CNV deletion 24192839
esv33464 CNV gain 17666407
esv3552217 CNV deletion 23714750
esv3584909 CNV gain 24956385
esv3635919 CNV loss 21293372
esv997604 CNV loss 20482838
nsv1045485 CNV gain+loss 25217958
nsv442366 CNV loss 18776908
nsv456731 CNV loss 19166990
nsv568550 CNV loss 21841781
nsv568564 CNV loss 21841781
nsv952576 CNV deletion 24416366

Additional Variant Information for SNORD115-4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD115-4 Gene

Disorders for SNORD115-4 Gene

Additional Disease Information for SNORD115-4

No disorders were found for SNORD115-4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD115-4 Gene

Publications for SNORD115-4 Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 58
  2. Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization. (PMID: 11106375) Cavaillé J … Hüttenhofer A (Proceedings of the National Academy of Sciences of the United States of America 2000) 2 3 58
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  4. The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. (PMID: 16357227) Kishore S … Stamm S (Science (New York, N.Y.) 2006) 3 58
  5. Exclusion of the C/D box snoRNA gene cluster HBII-52 from a major role in Prader-Willi syndrome. (PMID: 15565282) Runte M … Buiting K (Human genetics 2005) 3 58

Products for SNORD115-4 Gene

Sources for SNORD115-4 Gene

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