Aliases for SNORD114-4 Gene

Subcategory (RNA class) for SNORD114-4 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD114-4 Gene

  • Small Nucleolar RNA, C/D Box 114-4 2 3 5
  • SNORD114-4 2 5 170
  • 14q(II-4) 2 3
  • SNODB1612 177
  • SNODB266 177
  • RF00181 168

External Ids for SNORD114-4 Gene

Previous GeneCards Identifiers for SNORD114-4 Gene

  • GC14U900748
  • GC14P100494
  • GC14P100864
  • GC14P101421
  • GC14P081601
  • GC14P101425
  • GC14P101475
  • GC14P101934
  • GC14P102126

Summaries for SNORD114-4 Gene

GeneCards Summary for SNORD114-4 Gene

SNORD114-4 (Small Nucleolar RNA, C/D Box 114-4) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD114-4 Gene

  • Small nucleolar RNA SNORD113/SNORD114 family

Additional gene information for SNORD114-4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD114-4 Gene

Genomics for SNORD114-4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD114-4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J100955 Enhancer 0.5 Ensembl 600.7 +1.0 957 0.2 CREB1 FOS JUND FOSL2 BHLHE40 JUN ENSG00000200150 SNORD114-3 SNORD114-4 SNORD114-5 SNORD114-6 piR-34372 RTL1 MEG8 DIO3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD114-4 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD114-4 gene promoter:
  • CUTL1
  • FOXF2
  • FOXL1
  • FOXO1
  • FOXO1a
  • HFH-3
  • Pax-2
  • Pax-2a
  • Pax-2b
  • POU3F2

Genomic Locations for SNORD114-4 Gene

Genomic Locations for SNORD114-4 Gene
chr14:100,954,344-100,954,448
(GRCh38/hg38)
Size:
105 bases
Orientation:
Plus strand
chr14:101,420,681-101,420,785
(GRCh37/hg19)
Size:
105 bases
Orientation:
Plus strand

Genomic View for SNORD114-4 Gene

Genes around SNORD114-4 on UCSC Golden Path with GeneCards custom track
SNORD114-4 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD114-4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD114-4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD114-4 Gene

Proteins for SNORD114-4 Gene

Post-translational modifications for SNORD114-4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD114-4 Gene

Domains & Families for SNORD114-4 Gene

Gene Families for SNORD114-4 Gene

genes like me logo Genes that share domains with SNORD114-4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD114-4 Gene

Function for SNORD114-4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD114-4 Gene

Localization for SNORD114-4 Gene

Gene Ontology (GO) - Cellular Components for SNORD114-4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD114-4: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD114-4 Gene

Pathways & Interactions for SNORD114-4 Gene

PathCards logo

SuperPathways for SNORD114-4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD114-4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD114-4: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD114-4 Gene

Drugs & Compounds for SNORD114-4 Gene

No Compound Related Data Available

Transcripts for SNORD114-4 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD114-4 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000626DE9_9606 snoRNA 75 5

HGNC: 32992,

Ensembl: ENST00000363962 (view in UCSC) ,

Rfam: RF00181,

snoDB: SNODB1612,

snOPY: Homo_sapiens300413,

URS000075BC4F_9606 snoRNA 104 2

RefSeq: NR_003196,

snoDB: SNODB266,

SNORD114-4 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD114-4 Gene

No ASD Table

Relevant External Links for SNORD114-4 Gene

GeneLoc Exon Structure for
SNORD114-4

No data available for mRNA/cDNA for SNORD114-4 Gene

Expression for SNORD114-4 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD114-4

SOURCE GeneReport for Unigene cluster for SNORD114-4 Gene:

Hs.651071
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD114-4 Gene

Orthologs for SNORD114-4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD114-4 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SNORD113 31
  • 97 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SNORD113 31 31
  • 77 (a)
ManyToMany
Cow
(Bos Taurus)
Mammalia SNORD113 31
  • 61 (a)
ManyToMany
Species where no ortholog for SNORD114-4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD114-4 Gene

ENSEMBL:
Gene Tree for SNORD114-4 (if available)
TreeFam:
Gene Tree for SNORD114-4 (if available)

Paralogs for SNORD114-4 Gene

No data available for Paralogs for SNORD114-4 Gene

Variants for SNORD114-4 Gene

Additional dbSNP identifiers (rs#s) for SNORD114-4 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD114-4 Gene

Variant ID Type Subtype PubMed ID
dgv1970n100 CNV gain 25217958
dgv1971n100 CNV loss 25217958
dgv1972n100 CNV loss 25217958
dgv1973n100 CNV gain+loss 25217958
dgv1974n100 CNV gain 25217958
dgv1975n100 CNV loss 25217958
dgv1976n100 CNV loss 25217958
esv3635518 CNV gain 21293372
nsv1043713 CNV loss 25217958
nsv1052082 CNV loss 25217958
nsv1055067 CNV gain 25217958
nsv509550 CNV insertion 20534489
nsv565859 CNV gain 21841781

Additional Variant Information for SNORD114-4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD114-4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD114-4 Gene

Disorders for SNORD114-4 Gene

Additional Disease Information for SNORD114-4

No disorders were found for SNORD114-4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD114-4 Gene

Publications for SNORD114-4 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) Cavaillé J … Bachellerie JP (Human molecular genetics 2002) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD114-4 Gene

Sources for SNORD114-4 Gene