Aliases for SNORD113-8 Gene

Subcategory (RNA class) for SNORD113-8 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD113-8 Gene

  • Small Nucleolar RNA, C/D Box 113-8 2 3 5
  • SNORD113-8 2 5 170
  • 14q(I-8) 2 3
  • SNODB1274 177
  • SNODB1275 177
  • RF00181 168

External Ids for SNORD113-8 Gene

Previous GeneCards Identifiers for SNORD113-8 Gene

  • GC14U900700
  • GC14P100482
  • GC14P100858
  • GC14P100950
  • GC14P101409
  • GC14P081591
  • GC14P101098
  • GC14P101302
  • GC14P103483
  • GC14P103703
  • GC14P103901
  • GC14P104269
  • GC14P101927
  • GC14P102238
  • GC14P102405
  • GC14P102586
  • GC14P102754
  • GC14P102930
  • GC14P103110
  • GC14P103304

Summaries for SNORD113-8 Gene

GeneCards Summary for SNORD113-8 Gene

SNORD113-8 (Small Nucleolar RNA, C/D Box 113-8) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD113-8 Gene

  • Small nucleolar RNA SNORD113/SNORD114 family

Additional gene information for SNORD113-8 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD113-8 Gene

Genomics for SNORD113-8 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD113-8 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J101215 Enhancer 0.9 Ensembl ENCODE 10.6 +273.3 273273 2.8 GATAD2A IRF2 CEBPA SOX13 TCF7 FOXA2 ZNF205 CREM FOXP1 NR2F2 ENSG00000258681 LOC100128373 lnc-RTL1-18 SNORD113-6 SNORD113-7 SNORD113-8 SNORD113-9 SNORD113-3 SNORD113-4 MIR543
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD113-8 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD113-8 gene promoter:
  • CUTL1
  • FOXF2
  • FOXL1
  • MRF-2
  • Pax-2a
  • Pax-2b
  • Pbx1a
  • POU3F2
  • SRF
  • SRF (504 AA)

Genomic Locations for SNORD113-8 Gene

Genomic Locations for SNORD113-8 Gene
chr14:100,943,451-100,943,524
(GRCh38/hg38)
Size:
74 bases
Orientation:
Plus strand
chr14:101,409,788-101,409,861
(GRCh37/hg19)
Size:
74 bases
Orientation:
Plus strand

Genomic View for SNORD113-8 Gene

Genes around SNORD113-8 on UCSC Golden Path with GeneCards custom track
SNORD113-8 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD113-8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD113-8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD113-8 Gene

Proteins for SNORD113-8 Gene

Post-translational modifications for SNORD113-8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD113-8 Gene

Domains & Families for SNORD113-8 Gene

Gene Families for SNORD113-8 Gene

genes like me logo Genes that share domains with SNORD113-8: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD113-8 Gene

Function for SNORD113-8 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD113-8 Gene

Localization for SNORD113-8 Gene

Gene Ontology (GO) - Cellular Components for SNORD113-8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD113-8: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD113-8 Gene

Pathways & Interactions for SNORD113-8 Gene

PathCards logo

SuperPathways for SNORD113-8 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD113-8 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD113-8: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD113-8 Gene

Drugs & Compounds for SNORD113-8 Gene

No Compound Related Data Available

Transcripts for SNORD113-8 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD113-8 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000729F65_9606 snoRNA 74 4

HGNC: 32987,

Ensembl: ENST00000363497 (view in UCSC) ,

Rfam: RF00181,

snoDB: SNODB1275,

URS000075D37A_9606 snoRNA 73 3

RefSeq: NR_003236,

snoDB: SNODB1274,

snOPY: Homo_sapiens300408,

SNORD113-8 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD113-8 Gene

No ASD Table

Relevant External Links for SNORD113-8 Gene

GeneLoc Exon Structure for
SNORD113-8

No data available for mRNA/cDNA for SNORD113-8 Gene

Expression for SNORD113-8 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD113-8

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD113-8 Gene

Orthologs for SNORD113-8 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD113-8 Gene

Organism Taxonomy Gene Similarity Type Details
Dog
(Canis familiaris)
Mammalia SNORD113 31
  • 99 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia SNORD113 31
  • 91 (a)
OneToOne
Chimpanzee
(Pan troglodytes)
Mammalia SNORD113 31
  • 85 (a)
ManyToMany
Species where no ortholog for SNORD113-8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for SNORD113-8 Gene

ENSEMBL:
Gene Tree for SNORD113-8 (if available)
TreeFam:
Gene Tree for SNORD113-8 (if available)

Paralogs for SNORD113-8 Gene

No data available for Paralogs for SNORD113-8 Gene

Variants for SNORD113-8 Gene

Additional dbSNP identifiers (rs#s) for SNORD113-8 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD113-8 Gene

Variant ID Type Subtype PubMed ID
dgv1970n100 CNV gain 25217958
dgv1971n100 CNV loss 25217958
dgv1972n100 CNV loss 25217958
dgv1973n100 CNV gain+loss 25217958
dgv1974n100 CNV gain 25217958
dgv1975n100 CNV loss 25217958
dgv1976n100 CNV loss 25217958
esv3635518 CNV gain 21293372
nsv1043713 CNV loss 25217958
nsv1052082 CNV loss 25217958
nsv565859 CNV gain 21841781

Additional Variant Information for SNORD113-8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD113-8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD113-8 Gene

Disorders for SNORD113-8 Gene

Additional Disease Information for SNORD113-8

No disorders were found for SNORD113-8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD113-8 Gene

Publications for SNORD113-8 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) Cavaillé J … Bachellerie JP (Human molecular genetics 2002) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD113-8 Gene

Sources for SNORD113-8 Gene