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Aliases for SNORD113-3 Gene

Subcategory (RNA class) for SNORD113-3 Gene


Quality Score for this RNA gene is


Aliases for SNORD113-3 Gene

  • Small Nucleolar RNA, C/D Box 113-3 2 3 5
  • 14q(I-3) 3

External Ids for SNORD113-3 Gene

ORGUL Members for SNORD113-3 Gene

Previous GeneCards Identifiers for SNORD113-3 Gene

  • GC14U900713
  • GC14P100471
  • GC14P100853
  • GC14P100945
  • GC14P101396
  • GC14P081577
  • GC14P101092
  • GC14P101294
  • GC14P101922
  • GC14P102233
  • GC14P102397
  • GC14P102581
  • GC14P102749
  • GC14P102925

Summaries for SNORD113-3 Gene

GeneCards Summary for SNORD113-3 Gene

SNORD113-3 (Small Nucleolar RNA, C/D Box 113-3) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD113-3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD113-3 Gene

Genomics for SNORD113-3 Gene

GeneHancer (GH) Regulatory Elements for SNORD113-3 Gene

Promoters and enhancers for SNORD113-3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J101215 Enhancer 0.8 ENCODE 10.6 +286.8 286805 2.8 FOXA2 ARID4B RAD21 ZNF48 ZSCAN9 RARA CREM RXRA CEBPB NR2F2 LOC100128373 SNORD113-3 SNORD113-8 SNORD113-9 SNORD113-4 SNORD113-6 SNORD113-7 MIR543 ENSG00000222185 ENSG00000222095
GH14J101405 Enhancer 0.7 ENCODE 9.5 +475.7 475720 0.3 FOXA2 NFIB MAX RAD21 ZBTB40 YY1 EGR1 HNF4G RXRA USF2 MIR1247 DIO3 ENSG00000222185 ENSG00000222095 SNORD114-31 MIR493 MIR337 MIR127 MIR136 MIR431
GH14J101176 Enhancer 0.5 ENCODE 10.5 +247.4 247447 2 ZNF680 ZFP3 RCOR1 CHD2 MIR154 MIR377 MIR496 MIR134 MIR323B MIR485 MIR487A SNORD113-2 SNORD113-3 ENSG00000222185
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD113-3 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD113-3 gene promoter:
  • Bach1
  • SRF (504 AA)
  • SRF
  • MRF-2
  • Pbx1a
  • FOXO1a
  • FOXO1
  • HNF-1
  • HNF-1A

Genomic Locations for SNORD113-3 Gene

Genomic Locations for SNORD113-3 Gene
72 bases
Plus strand
73 bases
Plus strand

Genomic View for SNORD113-3 Gene

Genes around SNORD113-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD113-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD113-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD113-3 Gene

Proteins for SNORD113-3 Gene

Post-translational modifications for SNORD113-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD113-3 Gene

Domains & Families for SNORD113-3 Gene

Gene Families for SNORD113-3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD113-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD113-3 Gene

Function for SNORD113-3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD113-3 Gene

Localization for SNORD113-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD113-3 Gene

Pathways & Interactions for SNORD113-3 Gene

SuperPathways for SNORD113-3 Gene

No Data Available

Interacting Proteins for SNORD113-3 Gene

Gene Ontology (GO) - Biological Process for SNORD113-3 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD113-3 Gene

Drugs & Compounds for SNORD113-3 Gene

No Compound Related Data Available

Transcripts for SNORD113-3 Gene

mRNA/cDNA for SNORD113-3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD113-3 Gene

No ASD Table

Relevant External Links for SNORD113-3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD113-3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD113-3 Gene

genes like me logo Genes that share expression patterns with SNORD113-3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD113-3 Gene

Orthologs for SNORD113-3 Gene

Evolution for SNORD113-3 Gene

Gene Tree for SNORD113-3 (if available)
Gene Tree for SNORD113-3 (if available)

No data available for Orthologs for SNORD113-3 Gene

Paralogs for SNORD113-3 Gene

No data available for Paralogs for SNORD113-3 Gene

Variants for SNORD113-3 Gene

Sequence variations from dbSNP and Humsavar for SNORD113-3 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000325242 -- 100,929,370(+) T/C upstream_transcript_variant
rs1000459961 -- 100,929,428(+) G/T upstream_transcript_variant
rs1000925849 -- 100,928,080(+) A/T upstream_transcript_variant
rs1001226657 -- 100,929,914(+) A/G upstream_transcript_variant
rs1001360120 -- 100,928,502(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD113-3 Gene

Variant ID Type Subtype PubMed ID
nsv565859 CNV gain 21841781
nsv1052082 CNV loss 25217958
esv3635518 CNV gain 21293372
dgv1975n100 CNV loss 25217958
dgv1974n100 CNV gain 25217958
dgv1973n100 CNV gain+loss 25217958
dgv1972n100 CNV loss 25217958
dgv1971n100 CNV loss 25217958
dgv1970n100 CNV gain 25217958

Additional Variant Information for SNORD113-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD113-3 Gene

Disorders for SNORD113-3 Gene

Additional Disease Information for SNORD113-3

No disorders were found for SNORD113-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD113-3 Gene

Publications for SNORD113-3 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) Cavaillé J … Bachellerie JP (Human molecular genetics 2002) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD113-3 Gene

Sources for SNORD113-3 Gene

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