Aliases for SNORD113-3 Gene

Subcategory (RNA class) for SNORD113-3 Gene

snoRNA

Number of RNA Genes sources:

3 / 17

Aliases for SNORD113-3 Gene

  • Small Nucleolar RNA, C/D Box 113-3 2 3 5
  • SNORD113-3 2 5 170
  • 14q(I-3) 2 3
  • SNODB568 177
  • SNODB567 177
  • RF00181 168

External Ids for SNORD113-3 Gene

Previous GeneCards Identifiers for SNORD113-3 Gene

  • GC14U900713
  • GC14P100471
  • GC14P100853
  • GC14P100945
  • GC14P101396
  • GC14P081577
  • GC14P101092
  • GC14P101294
  • GC14P103478
  • GC14P103698
  • GC14P103896
  • GC14P104264
  • GC14P101922
  • GC14P102233
  • GC14P102397
  • GC14P102581
  • GC14P102749
  • GC14P102925
  • GC14P103105
  • GC14P103298

Summaries for SNORD113-3 Gene

GeneCards Summary for SNORD113-3 Gene

SNORD113-3 (Small Nucleolar RNA, C/D Box 113-3) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD113-3 Gene

  • Small nucleolar RNA SNORD113/SNORD114 family

Additional gene information for SNORD113-3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD113-3 Gene

Genomics for SNORD113-3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SNORD113-3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD113-3 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the SNORD113-3 gene promoter:
  • Bach1
  • FOXO1
  • FOXO1a
  • HNF-1
  • HNF-1A
  • MRF-2
  • Pbx1a
  • SRF
  • SRF (504 AA)

Genomic Locations for SNORD113-3 Gene

Genomic Locations for SNORD113-3 Gene
chr14:100,929,919-100,929,990
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr14:101,396,256-101,396,328
(GRCh37/hg19)
Size:
73 bases
Orientation:
Plus strand

Genomic View for SNORD113-3 Gene

Genes around SNORD113-3 on UCSC Golden Path with GeneCards custom track
SNORD113-3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SNORD113-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD113-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD113-3 Gene

Proteins for SNORD113-3 Gene

Post-translational modifications for SNORD113-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD113-3 Gene

Domains & Families for SNORD113-3 Gene

Gene Families for SNORD113-3 Gene

genes like me logo Genes that share domains with SNORD113-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD113-3 Gene

Function for SNORD113-3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD113-3 Gene

Localization for SNORD113-3 Gene

Gene Ontology (GO) - Cellular Components for SNORD113-3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with SNORD113-3: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SNORD113-3 Gene

Pathways & Interactions for SNORD113-3 Gene

PathCards logo

SuperPathways for SNORD113-3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SNORD113-3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006396 RNA processing IEA --
genes like me logo Genes that share ontologies with SNORD113-3: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD113-3 Gene

Drugs & Compounds for SNORD113-3 Gene

No Compound Related Data Available

Transcripts for SNORD113-3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SNORD113-3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00006762EA_9606 snoRNA 72 4

HGNC: 32982,

Ensembl: ENST00000364830 (view in UCSC) ,

Rfam: RF00181,

snoDB: SNODB568,

URS000075A0ED_9606 snoRNA 71 3

RefSeq: NR_003231,

snoDB: SNODB567,

snOPY: Homo_sapiens300436,

SNORD113-3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD113-3 Gene

No ASD Table

Relevant External Links for SNORD113-3 Gene

GeneLoc Exon Structure for
SNORD113-3

No data available for mRNA/cDNA for SNORD113-3 Gene

Expression for SNORD113-3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD113-3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD113-3

genes like me logo Genes that share expression patterns with SNORD113-3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD113-3 Gene

Orthologs for SNORD113-3 Gene

Evolution for SNORD113-3 Gene

ENSEMBL:
Gene Tree for SNORD113-3 (if available)
TreeFam:
Gene Tree for SNORD113-3 (if available)

No data available for Orthologs for SNORD113-3 Gene

Paralogs for SNORD113-3 Gene

No data available for Paralogs for SNORD113-3 Gene

Variants for SNORD113-3 Gene

Additional dbSNP identifiers (rs#s) for SNORD113-3 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD113-3 Gene

Variant ID Type Subtype PubMed ID
dgv1970n100 CNV gain 25217958
dgv1971n100 CNV loss 25217958
dgv1972n100 CNV loss 25217958
dgv1973n100 CNV gain+loss 25217958
dgv1974n100 CNV gain 25217958
dgv1975n100 CNV loss 25217958
esv3635518 CNV gain 21293372
nsv1052082 CNV loss 25217958
nsv565859 CNV gain 21841781

Additional Variant Information for SNORD113-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD113-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD113-3 Gene

Disorders for SNORD113-3 Gene

Additional Disease Information for SNORD113-3

No disorders were found for SNORD113-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD113-3 Gene

Publications for SNORD113-3 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) Cavaillé J … Bachellerie JP (Human molecular genetics 2002) 2 3
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3

Products for SNORD113-3 Gene

Sources for SNORD113-3 Gene