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Aliases for SNORD113-2 Gene

Subcategory (RNA class) for SNORD113-2 Gene

snoRNA

Quality Score for this RNA gene is

13

Aliases for SNORD113-2 Gene

  • Small Nucleolar RNA, C/D Box 113-2 2 3 5
  • 14q(I-2) 3

External Ids for SNORD113-2 Gene

ORGUL Members for SNORD113-2 Gene

Previous GeneCards Identifiers for SNORD113-2 Gene

  • GC14U900702
  • GC14P100470
  • GC14P100852
  • GC14P100943
  • GC14P101393
  • GC14P081575
  • GC14P101091
  • GC14P101293
  • GC14P103477
  • GC14P101921
  • GC14P102230
  • GC14P102396
  • GC14P102576
  • GC14P102748
  • GC14P102924
  • GC14P103101
  • GC14P103297

Summaries for SNORD113-2 Gene

GeneCards Summary for SNORD113-2 Gene

SNORD113-2 (Small Nucleolar RNA, C/D Box 113-2) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD113-2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD113-2 Gene

Genomics for SNORD113-2 Gene

GeneHancer (GH) Regulatory Elements for SNORD113-2 Gene

Promoters and enhancers for SNORD113-2 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD113-2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD113-2 gene promoter:
  • Bach1
  • FOXO1
  • FOXO1a
  • HEN1
  • HNF-1A
  • MRF-2
  • Pbx1a
  • SRF
  • SRF (504 AA)

Genomic Locations for SNORD113-2 Gene

Genomic Locations for SNORD113-2 Gene
chr14:100,927,342-100,927,413
(GRCh38/hg38)
Size:
72 bases
Orientation:
Plus strand
chr14:101,393,679-101,393,750
(GRCh37/hg19)
Size:
72 bases
Orientation:
Plus strand

Genomic View for SNORD113-2 Gene

Genes around SNORD113-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD113-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD113-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD113-2 Gene

Proteins for SNORD113-2 Gene

Post-translational modifications for SNORD113-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD113-2 Gene

Domains & Families for SNORD113-2 Gene

Gene Families for SNORD113-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD113-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD113-2 Gene

Function for SNORD113-2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD113-2 Gene

Localization for SNORD113-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD113-2 Gene

Pathways & Interactions for SNORD113-2 Gene

PathCards logo

SuperPathways for SNORD113-2 Gene

No Data Available

Interacting Proteins for SNORD113-2 Gene

Gene Ontology (GO) - Biological Process for SNORD113-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD113-2 Gene

Drugs & Compounds for SNORD113-2 Gene

No Compound Related Data Available

Transcripts for SNORD113-2 Gene

mRNA/cDNA for SNORD113-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD113-2 Gene

No ASD Table

Relevant External Links for SNORD113-2 Gene

GeneLoc Exon Structure for
SNORD113-2
ECgene alternative splicing isoforms for
SNORD113-2

Expression for SNORD113-2 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD113-2 Gene

Orthologs for SNORD113-2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD113-2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD113 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD113 35
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm24564 35
  • 68 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD113 35
  • 63 (a)
OneToOne
Species where no ortholog for SNORD113-2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD113-2 Gene

ENSEMBL:
Gene Tree for SNORD113-2 (if available)
TreeFam:
Gene Tree for SNORD113-2 (if available)

Paralogs for SNORD113-2 Gene

No data available for Paralogs for SNORD113-2 Gene

Variants for SNORD113-2 Gene

Sequence variations from dbSNP and Humsavar for SNORD113-2 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1002770908 -- 100,927,736(+) G/A downstream_transcript_variant
rs1003805815 -- 100,926,620(+) G/T upstream_transcript_variant
rs1004872951 -- 100,925,961(+) T/C upstream_transcript_variant
rs1006051035 -- 100,927,686(+) C/T downstream_transcript_variant
rs1006144241 -- 100,927,306(+) A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD113-2 Gene

Variant ID Type Subtype PubMed ID
dgv1970n100 CNV gain 25217958
dgv1971n100 CNV loss 25217958
dgv1972n100 CNV loss 25217958
dgv1973n100 CNV gain+loss 25217958
dgv1974n100 CNV gain 25217958
dgv1975n100 CNV loss 25217958
esv3635518 CNV gain 21293372
nsv1052082 CNV loss 25217958
nsv565859 CNV gain 21841781

Additional Variant Information for SNORD113-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD113-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD113-2 Gene

Disorders for SNORD113-2 Gene

Additional Disease Information for SNORD113-2

No disorders were found for SNORD113-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD113-2 Gene

Publications for SNORD113-2 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) Cavaillé J … Bachellerie JP (Human molecular genetics 2002) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD113-2 Gene

Sources for SNORD113-2 Gene

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