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Aliases for SNORD112 Gene

Subcategory (RNA class) for SNORD112 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORD112 Gene

  • Small Nucleolar RNA, C/D Box 112 2 3 5
  • 14q(0) 3

External Ids for SNORD112 Gene

ORGUL Members for SNORD112 Gene

Previous GeneCards Identifiers for SNORD112 Gene

  • GC14U900587
  • GC14P100445
  • GC14P100461
  • GC14P100845
  • GC14P100941
  • GC14P101364
  • GC14P081545
  • GC14P101400
  • GC14P102117
  • GC14P101088
  • GC14P101290
  • GC14P101919
  • GC14P102227
  • GC14P102394
  • GC14P102574
  • GC14P102746

Summaries for SNORD112 Gene

Entrez Gene Summary for SNORD112 Gene

  • Small nucleolar RNAs (snoRNAs), like SNORD112, guide the formation of 2-prime O-methylation of ribosomal RNA (rRNA) and U small nuclear RNAs (snRNAs) through a specific RNA duplex at each modification site (Cavaille et al., 2002 [PubMed 12045206]).[supplied by OMIM, Nov 2010]

GeneCards Summary for SNORD112 Gene

SNORD112 (Small Nucleolar RNA, C/D Box 112) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD112 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD112 Gene

Genomics for SNORD112 Gene

GeneHancer (GH) Regulatory Elements for SNORD112 Gene

Promoters and enhancers for SNORD112 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I100819 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 9.9 -71.4 -71384 13.4 ELF3 PKNOX1 FOXA2 ZSCAN4 NFXL1 ZNF48 RAD21 RFX5 ZNF280A SLC30A9 ENSG00000274884 DLK1 MEG3 MIR493 MIR337 MIR431 MIR127 MIR136 MIR433 RTL1
GH14I100833 Enhancer 0.9 ENCODE dbSUPER 10.8 -59.1 -59125 10.6 BCOR ESRRA FOXA2 ZBTB21 ZMYM3 ZIC2 TEAD3 ZFHX2 SCRT2 FOSL2 MEG3 MIR493 MIR337 MIR127 MIR431 MIR433 MIR136 RTL1 SNORD112 MIR370
GH14I101215 Enhancer 0.8 ENCODE 10 +318.8 318804 2.8 FOXA2 ARID4B RAD21 ZNF48 ZSCAN9 RARA CREM RXRA CEBPB NR2F2 LOC100128373 SNORD113-3 SNORD113-4 SNORD113-6 SNORD113-7 SNORD113-8 SNORD113-9 MIR543 ENSG00000222185 ENSG00000222095
GH14I101096 Enhancer 0.7 FANTOM5 ENCODE 9.5 +200.4 200428 3.2 ATF4 POLR2A JUN MAFK RTL1 LOC105370670 MEG9 MIR369 MIR410 MIR412 MIR541 MIR656 MIR409 MIR496
GH14I100746 Enhancer 0.6 ENCODE 10.1 -150.6 -150551 1.4 CTCF FOXA2 INSM2 CEBPB EP300 RAD21 SP1 JUND ZNF629 CEBPA SNORD112 DLK1 PIR41786 MEG3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD112 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD112 gene promoter:

Genomic Locations for SNORD112 Gene

Genomic Locations for SNORD112 Gene
chr14:100,897,920-100,897,996
(GRCh38/hg38)
Size:
77 bases
Orientation:
Plus strand
chr14:101,361,107-101,402,336
(GRCh37/hg19)

Genomic View for SNORD112 Gene

Genes around SNORD112 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD112 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD112 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD112 Gene

Proteins for SNORD112 Gene

Post-translational modifications for SNORD112 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD112 Gene

Domains & Families for SNORD112 Gene

Gene Families for SNORD112 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD112: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD112 Gene

Function for SNORD112 Gene

Phenotypes From GWAS Catalog for SNORD112 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD112 Gene

Localization for SNORD112 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD112 Gene

Pathways & Interactions for SNORD112 Gene

SuperPathways for SNORD112 Gene

No Data Available

Interacting Proteins for SNORD112 Gene

Gene Ontology (GO) - Biological Process for SNORD112 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORD112 Gene

Drugs & Compounds for SNORD112 Gene

No Compound Related Data Available

Transcripts for SNORD112 Gene

mRNA/cDNA for SNORD112 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD112 Gene

No ASD Table

Relevant External Links for SNORD112 Gene

GeneLoc Exon Structure for
SNORD112
ECgene alternative splicing isoforms for
SNORD112

Expression for SNORD112 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD112 Gene:

SNORD112
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD112 Gene

Orthologs for SNORD112 Gene

Evolution for SNORD112 Gene

ENSEMBL:
Gene Tree for SNORD112 (if available)
TreeFam:
Gene Tree for SNORD112 (if available)

No data available for Orthologs for SNORD112 Gene

Paralogs for SNORD112 Gene

No data available for Paralogs for SNORD112 Gene

Variants for SNORD112 Gene

Sequence variations from dbSNP and Humsavar for SNORD112 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000122182 -- 100,898,196(+) A/T downstream_transcript_variant
rs1000294360 -- 100,896,901(+) T/TT upstream_transcript_variant
rs1001116800 -- 100,896,917(+) C/T upstream_transcript_variant
rs1001528489 -- 100,897,047(+) T/C upstream_transcript_variant
rs1002018762 -- 100,896,106(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD112 Gene

Variant ID Type Subtype PubMed ID
nsv1052082 CNV loss 25217958
esv3635518 CNV gain 21293372

Additional Variant Information for SNORD112 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD112

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD112 Gene

Disorders for SNORD112 Gene

Additional Disease Information for SNORD112

No disorders were found for SNORD112 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD112 Gene

Publications for SNORD112 Gene

  1. Identification of tandemly-repeated C/D snoRNA genes at the imprinted human 14q32 domain reminiscent of those at the Prader-Willi/Angelman syndrome region. (PMID: 12045206) Cavaillé J … Bachellerie JP (Human molecular genetics 2002) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD112 Gene

Sources for SNORD112 Gene

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