Aliases for SNORD111 Gene

Subcategory (RNA class) for SNORD111 Gene

snoRNA

Number of RNA Genes sources:

2 / 14

Aliases for SNORD111 Gene

  • Small Nucleolar RNA, C/D Box 111 2 3 5
  • SNORD111 2 174
  • HBII-82 3
  • RF00611 172

External Ids for SNORD111 Gene

Previous GeneCards Identifiers for SNORD111 Gene

  • GC16U900064
  • GC16P069130
  • GC16P056403

Summaries for SNORD111 Gene

GeneCards Summary for SNORD111 Gene

SNORD111 (Small Nucleolar RNA, C/D Box 111) is an RNA Gene, and is affiliated with the snoRNA class.

Rfam classification for SNORD111 Gene

  • Small nucleolar RNA SNORD111

Additional gene information for SNORD111 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORD111 Gene

Genomics for SNORD111 Gene

GeneHancer (GH) Regulatory Elements for SNORD111 Gene

Promoters and enhancers for SNORD111 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SNORD111 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD111 gene promoter:
  • AML1a
  • ATF6
  • FOXF2
  • GATA-2
  • ITF-2
  • LCR-F1
  • NCX
  • NRSF form 1
  • NRSF form 2
  • Tal-1beta

Genomic Locations for SNORD111 Gene

Genomic Locations for SNORD111 Gene
chr16:70,538,005-70,538,098
(GRCh38/hg38)
Size:
94 bases
Orientation:
Plus strand
chr16:70,571,908-70,572,001
(GRCh37/hg19)
Size:
94 bases
Orientation:
Plus strand

Genomic View for SNORD111 Gene

Genes around SNORD111 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD111 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD111 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD111 Gene

Proteins for SNORD111 Gene

Post-translational modifications for SNORD111 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD111 Gene

Domains & Families for SNORD111 Gene

Gene Families for SNORD111 Gene

genes like me logo Genes that share domains with SNORD111: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SNORD111 Gene

Function for SNORD111 Gene

Phenotypes From GWAS Catalog for SNORD111 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD111 Gene

Localization for SNORD111 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNORD111 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD111 Gene

Pathways & Interactions for SNORD111 Gene

PathCards logo

SuperPathways for SNORD111 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SNORD111 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SNORD111 Gene

Drugs & Compounds for SNORD111 Gene

No Compound Related Data Available

Transcripts for SNORD111 Gene

mRNA/cDNA for SNORD111 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 Rfam transcripts :
1 snOPY transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD111 Gene

No ASD Table

Relevant External Links for SNORD111 Gene

GeneLoc Exon Structure for
SNORD111

Expression for SNORD111 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNORD111 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SNORD111

genes like me logo Genes that share expression patterns with SNORD111: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD111 Gene

Orthologs for SNORD111 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORD111 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORD111 31
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORD111 31
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Snord111 31
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORD111 31
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORD111 31
  • 71 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORD111 31
  • 70 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORD111 31
  • 68 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORD111 31
  • 64 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORD111 31 31 31 31 31
  • 70 (a)
ManyToMany
Species where no ortholog for SNORD111 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORD111 Gene

ENSEMBL:
Gene Tree for SNORD111 (if available)
TreeFam:
Gene Tree for SNORD111 (if available)

Paralogs for SNORD111 Gene

No data available for Paralogs for SNORD111 Gene

Variants for SNORD111 Gene

Additional dbSNP identifiers (rs#s) for SNORD111 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORD111 Gene

Variant ID Type Subtype PubMed ID
esv3892881 CNV gain 25118596
esv3892883 CNV gain 25118596
nsv7285 OTHER inversion 18451855

Additional Variant Information for SNORD111 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORD111

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SNORD111 Gene

Disorders for SNORD111 Gene

Additional Disease Information for SNORD111

No disorders were found for SNORD111 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD111 Gene

Publications for SNORD111 Gene

  1. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. (PMID: 11387227) Hüttenhofer A … Brosius J (The EMBO journal 2001) 2 3 54
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 54

Products for SNORD111 Gene

Sources for SNORD111 Gene