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Aliases for SNORD109B Gene

Subcategory (RNA class) for SNORD109B Gene


Quality Score for this RNA gene is


Aliases for SNORD109B Gene

  • Small Nucleolar RNA, C/D Box 109B 2 3 5
  • HBII-438B C/D Box SnoRNA 3
  • HBII-438B 3

External Ids for SNORD109B Gene

ORGUL Members for SNORD109B Gene

Previous GeneCards Identifiers for SNORD109B Gene

  • GC15P023145
  • GC15P023203
  • GC15P023238
  • GC15P023305
  • GC15P023398
  • GC15P023413
  • GC15P023498
  • GC15P023586
  • GC15P025523
  • GC15P003647
  • GC15P025282
  • GC15P025391
  • GC15P025495
  • GC15P025547
  • GC15P025619
  • GC15P025661
  • GC15P025743

Summaries for SNORD109B Gene

Entrez Gene Summary for SNORD109B Gene

  • This gene encodes a C/D box-type small nucleolar RNA that is expressed predominantly in the brain. Expression of this RNA is not detectable in the brains of patients with Prader-Willi syndrome. [provided by RefSeq, Jun 2010]

GeneCards Summary for SNORD109B Gene

SNORD109B (Small Nucleolar RNA, C/D Box 109B) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORD109B include Prader-Willi Syndrome.

Additional gene information for SNORD109B Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD109B Gene

Genomics for SNORD109B Gene

GeneHancer (GH) Regulatory Elements for SNORD109B Gene

Promoters and enhancers for SNORD109B Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I025317 Enhancer 0.3 FANTOM5 11.1 +39.8 39761 0.3 ATF2 SNORD115-48 SNORD109B UBE3A SNURF SNRPN ENSG00000261529 SNHG14
GH15I025319 Enhancer 0.3 FANTOM5 11.1 +40.9 40920 0.2 SNORD115-48 SNORD109B UBE3A SNRPN SNURF ENSG00000261529 SNHG14
GH15I025320 Enhancer 0.3 FANTOM5 11.1 +42.7 42728 1.3 SNORD115-48 SNORD109B UBE3A SNRPN SNURF ENSG00000261529 SNHG14
GH15I025327 Enhancer 0.2 ENCODE 10.9 +49.6 49569 1 SNORD109B SNORD115-48 UBE3A ENSG00000261529 SNHG14
GH15I025346 Enhancer 0.5 ENCODE 0.2 +67.8 67776 0.1 CTCF ZNF512 ZNF143 RAD21 ENSG00000261529 SNORD109B UBE3A SNHG14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD109B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD109B gene promoter:

Genomic Locations for SNORD109B Gene

Genomic Locations for SNORD109B Gene
67 bases
Plus strand

Genomic View for SNORD109B Gene

Genes around SNORD109B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD109B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD109B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD109B Gene

Proteins for SNORD109B Gene

Post-translational modifications for SNORD109B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD109B Gene

Domains & Families for SNORD109B Gene

Gene Families for SNORD109B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD109B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD109B Gene

Function for SNORD109B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD109B Gene

Localization for SNORD109B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD109B Gene

Pathways & Interactions for SNORD109B Gene

SuperPathways for SNORD109B Gene

No Data Available

Interacting Proteins for SNORD109B Gene

Gene Ontology (GO) - Biological Process for SNORD109B Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD109B Gene

Drugs & Compounds for SNORD109B Gene

No Compound Related Data Available

Transcripts for SNORD109B Gene

mRNA/cDNA for SNORD109B Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD109B Gene

No ASD Table

Relevant External Links for SNORD109B Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD109B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORD109B Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD109B Gene

Orthologs for SNORD109B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORD109B Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SNORD109A 34
  • 100 (a)
(Bos Taurus)
Mammalia SNORD109A 34 34
  • 97 (a)
(Canis familiaris)
Mammalia SNORD109A 34
  • 94 (a)
Species where no ortholog for SNORD109B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORD109B Gene

Gene Tree for SNORD109B (if available)
Gene Tree for SNORD109B (if available)

Paralogs for SNORD109B Gene

No data available for Paralogs for SNORD109B Gene

Variants for SNORD109B Gene

Sequence variations from dbSNP and Humsavar for SNORD109B Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1004689591 -- 25,278,660(+) G/A downstream_transcript_variant
rs1005537134 -- 25,278,504(+) C/A downstream_transcript_variant
rs1007042058 -- 25,278,848(+) A/G downstream_transcript_variant
rs1007123282 -- 25,277,218(+) C/T upstream_transcript_variant
rs1008147872 -- 25,278,144(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD109B Gene

Variant ID Type Subtype PubMed ID
esv33464 CNV gain 17666407
nsv1045067 CNV gain 25217958

Additional Variant Information for SNORD109B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD109B Gene

Disorders for SNORD109B Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORD109B Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
prader-willi syndrome
  • pws
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SNORD109B

genes like me logo Genes that share disorders with SNORD109B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORD109B Gene

Publications for SNORD109B Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD109B Gene

Sources for SNORD109B Gene

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