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Aliases for SNORD109A Gene

Subcategory (RNA class) for SNORD109A Gene


Quality Score for this RNA gene is


Aliases for SNORD109A Gene

  • Small Nucleolar RNA, C/D Box 109A 2 3 5
  • HBII-438A C/D Box SnoRNA 3
  • HBII-438A 3

External Ids for SNORD109A Gene

ORGUL Members for SNORD109A Gene

Previous GeneCards Identifiers for SNORD109A Gene

  • GC15P022839
  • GC15P025287
  • GC15P003423

Summaries for SNORD109A Gene

Entrez Gene Summary for SNORD109A Gene

  • This gene encodes a C/D box-type small nucleolar RNA that is expressed predominantly in the brain. Expression of this RNA is not detectable in the brains of patients with Prader-Willi syndrome. [provided by RefSeq, Jun 2010]

GeneCards Summary for SNORD109A Gene

SNORD109A (Small Nucleolar RNA, C/D Box 109A) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORD109A Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORD109A Gene

Genomics for SNORD109A Gene

GeneHancer (GH) Regulatory Elements for SNORD109A Gene

Promoters and enhancers for SNORD109A Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I024897 Enhancer 0.5 ENCODE 10.6 -142.9 -142867 2.8 POLR2A NFIB POU5F1 ETS1 EZH2 SNURF ENSG00000214265 SNRPN SNORD109A SNORD116-1 SNORD116-2 SNORD116-3 ENSG00000261069 RPL5P1 PIR42622
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORD109A on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORD109A gene promoter:

Genomic Locations for SNORD109A Gene

Genomic Locations for SNORD109A Gene
67 bases
Plus strand

Genomic View for SNORD109A Gene

Genes around SNORD109A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORD109A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORD109A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORD109A Gene

Proteins for SNORD109A Gene

Post-translational modifications for SNORD109A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORD109A Gene

Domains & Families for SNORD109A Gene

Gene Families for SNORD109A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORD109A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORD109A Gene

Function for SNORD109A Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORD109A Gene

Localization for SNORD109A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORD109A Gene

Pathways & Interactions for SNORD109A Gene

SuperPathways for SNORD109A Gene

No Data Available

Interacting Proteins for SNORD109A Gene

Gene Ontology (GO) - Biological Process for SNORD109A Gene


No data available for Pathways by source and SIGNOR curated interactions for SNORD109A Gene

Drugs & Compounds for SNORD109A Gene

No Compound Related Data Available

Transcripts for SNORD109A Gene

mRNA/cDNA for SNORD109A Gene

(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORD109A Gene

No ASD Table

Relevant External Links for SNORD109A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNORD109A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORD109A Gene

mRNA differential expression in normal tissues according to GTEx for SNORD109A Gene

This gene is overexpressed in Muscle - Skeletal (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of SNORD109A Gene:

genes like me logo Genes that share expression patterns with SNORD109A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORD109A Gene

Orthologs for SNORD109A Gene

Evolution for SNORD109A Gene

Gene Tree for SNORD109A (if available)
Gene Tree for SNORD109A (if available)

No data available for Orthologs for SNORD109A Gene

Paralogs for SNORD109A Gene

No data available for Paralogs for SNORD109A Gene

Variants for SNORD109A Gene

Sequence variations from dbSNP and Humsavar for SNORD109A Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1001396143 -- 25,041,891(+) T/G upstream_transcript_variant
rs1001500833 -- 25,042,276(+) T/A downstream_transcript_variant
rs1001760185 -- 25,041,454(+) A/G upstream_transcript_variant
rs1002887801 -- 25,040,460(+) C/T upstream_transcript_variant
rs1003944195 -- 25,040,692(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORD109A Gene

Variant ID Type Subtype PubMed ID
esv33464 CNV gain 17666407
nsv1045067 CNV gain 25217958

Additional Variant Information for SNORD109A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORD109A Gene

Disorders for SNORD109A Gene

Additional Disease Information for SNORD109A

No disorders were found for SNORD109A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORD109A Gene

Publications for SNORD109A Gene

  1. The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A. (PMID: 11726556) Runte M … Buiting K (Human molecular genetics 2001) 2 3 58
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58

Products for SNORD109A Gene

Sources for SNORD109A Gene

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